BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321920

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42395.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   375    9e-104


> AT2G42395.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17653138-17654034 
REVERSE LENGTH=797
Length=797

 Score =  375 bits (203),  Expect = 9e-104
 Identities = 280/315 (89%), Gaps = 14/315 (4%)
 Strand=Plus/Plus

Query  1    ATGGC-AACAAATTCTGAAAGCTCGTTTAAAGCAGAGAAATCAGATGGG-GACTGTGTTA  58
            ||||| || ||||||||  ||||||||| |||||||||||||||| |||  | |||||||
Sbjct  55   ATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGAGAAATCAGA-GGGAAAGTGTGTTA  112

Query  59   CTACTACTAC-GAAACCACAACAGCAAAGTAGT----CGGATTTTGAGCAAGGAAGAGGA  113
            | || ||||| | || ||| | | |||||||||    | | |||||||||||||||||||
Sbjct  113  CGACGACTACTG-AAGCAC-A-A-CAAAGTAGTCAACCTG-TTTTGAGCAAGGAAGAGGA  167

Query  114  GAAAGTGAGAGATAACTACTTGTTCTGCTGTGAGAATTTTTACACTTTTCCTGAGATGAT  173
            |||||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct  168  GAAAGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTTCTACACTCTTCCTGAGATGAT  227

Query  174  CAAGTACATGAAGGAGAATCATGGTGTAGGACAAACCACTGTGACAAAGGTTTTCAGGGA  233
            ||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  228  CAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCACTGTGACAAAGGTTTTCAGGGA  287

Query  234  ACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCACAGACTAGAATGAAGAC  293
            |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| |
Sbjct  288  ACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCTCAGAAAAGAATGAAGGC  347

Query  294  AAGAACAACAACAAC  308
            |||||||||||||||
Sbjct  348  AAGAACAACAACAAC  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5