BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321927 Length=2649 Score E Sequences producing significant alignments: (Bits) Value AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679... 2435 0.0 AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685... 67.6 6e-10 > AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679887-17685187 REVERSE LENGTH=2697 Length=2697 Score = 2435 bits (1318), Expect = 0.0 Identities = 1625/1768 (92%), Gaps = 42/1768 (2%) Strand=Plus/Plus Query 903 AGAAGCATGCAACTTGTTCTGCGCTGAGGTCTCAGACCCGTGTTTCTCTAAGACATTGCC 962 |||||||||||||||||||||| | ||||||||| || ||||||||||||||| ||||| Sbjct 951 AGAAGCATGCAACTTGTTCTGCCCCGAGGTCTCAAACTGGTGTTTCTCTAAGACGTTGCC 1010 Query 963 TCTTAGCACGCTTGAAGAAGAAGGGTTTCTGGAGAACAACAAACTAACCATTGAAATCTA 1022 |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1011 TCTTAGCAAGCTTCAAGAAAAAGGGTTTCTGGAGAACAACAAACTAACCATTGAAGTCTA 1070 Query 1023 CATTAAAGTTAAATCAGTGAGTTGGATCTTCGTGAAACACCCAGACATTGCAGTAGGTTT 1082 |||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||| Sbjct 1071 CATTAAAGTTAAATCAGTGAGTTGGATCTTCGTGAAGCATCCAGACACTGCAGTACATTT 1130 Query 1083 CAGACCAAAGAACAAACTGGTGAAGAAAGCATATATGAATATTCTCCTCGGCCTCATCGA 1142 | |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| | Sbjct 1131 CTTACCAAAGAACAAACTGGTGAAGAAAGCACATATGAATACTCTCCTCTGCCTCATCAA 1190 Query 1143 GACACTGCGCAAGCCTCCTCTAAGCTTGTCTGAGACTGAGCTAAGAAACGCTCACAGCGA 1202 ||||||| | |||||||||||||| |||||||||||||||||||| || ||| ||||||| Sbjct 1191 GACACTGAGAAAGCCTCCTCTAAGTTTGTCTGAGACTGAGCTAAGCAATGCTTACAGCGA 1250 Query 1203 GTTGACTAAGTTGATGGAAGTGA-GCTTCAAGCTAGACTGGTTAAAAACAAAGCTTGAGG 1261 |||||||||||| | |||||| | |||||||||||||||||||||| ||||||||||| Sbjct 1251 GTTGACTAAGTTAACGGAAGT-AGGCTTCAAGCTAGACTGGTTAAAGTCAAAGCTTGAGA 1309 Query 1262 AGGTTTCCTTGGAGAGGAAGAAAGCAGTTTCTGATGG---T----TCT----C-A-GA-T 1307 ||| ||||||||||||||||||| ||||||||||||| | ||| | | || | Sbjct 1310 AGGCTTCCTTGGAGAGGAAGAAATCAGTTTCTGATGGTTCTCAGATCTCCGCCTACGATT 1369 Query 1308 --AGGATCAAACAAATCTAAAAGTAATTCCTCTGTTTCCTCCTCCCTAGCTCAAAGAAAT 1365 |||||||||||||||| ||||| ||| ||||||| ||||| || ||| ||||| | Sbjct 1370 CAAGGATCAAACAAATCTCCAAGTATTTCGTCTGTTTTCTCCT-CC---CTCGAAGAACT 1425 Query 1366 ACCAAAACCCTaaaaaaaaaTAAACAGATGGGAACGCAATTCCGCAAAGCTTTAACTTTG 1425 ||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 1426 ACCAAAA-CCT--TAAAAAGTAAACAGATGGGGACGCAATTCCGCAAAGCTTTAACTTTG 1482 Query 1426 ACGGTAACCAACTTCTCCCAAAAGAGTTCTCCAATTAACTCTCCTCCGTTCCCTAGCGGT 1485 |||||||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||| Sbjct 1483 ACGGTAACCAACTTCTCCCAAAAGAGCTCTCCGATAAACTCTCCTCCTTTCCCAAGCGGT 1542 Query 1486 GGCTGCGATTGGTATATTAAAGTTTATCCTAAGGGCAGTGTTGATGATAATTACTTGTCT 1545 |||||| |||||||||||||| ||||||| ||||| |||| ||||||||||||||||||| Sbjct 1543 GGCTGCAATTGGTATATTAAATTTTATCCCAAGGGAAGTGCTGATGATAATTACTTGTCT 1602 Query 1546 CTGTTCCTGTCTCCTGATGATCCTAAATCACTTGGACTTAATTGGAAAAGGAGAGCTAAT 1605 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1603 TTGTTCCTGTCCCCTGATGATCCTAAATCACTTGGACTTAATTGGAAAAGGAGAGCTAAT 1662 Query 1606 TTTTACTTTGTTTTGCTGAATCAATCAGGCAAAGAACTTCATAGAACACCTGAAATAGGT 1665 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1663 TTTTACTTTGTTTTGCTGAATCAATCAGGCAAAGAACTTCATCGAACACCTGAAATAGGT 1722 Query 1666 GATCAAGTG-TTTTGTGATGACTCACTAAGCTGGGGTTTTCCACAGACACTGCCTCGAAA 1724 |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1723 GATCAA-TGGTTTTGTGATGACTCACTAAGCTGGGGTTTTCCACAGACATTGCCTCGAAA 1781 Query 1725 AAAGCTTCTAGACAAAATCTTTCTAGATAACGATAGATTCAACATTGAAATCTATATTAA 1784 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1782 AAAGCTTCTAGACAAAATCTTTCTTGATAACGACAGATTCAACATTGAAATCTATATTAA 1841 Query 1785 AGTTATTGAAGTTGTTGAAGGATATCATATGTTTCCAGCTTCATTCACTAATAAGCTCTT 1844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1842 AGTTATTGAAGTTGTTGAAGGATATCATATGTTTCCAGCTTCATTCACTAATAAGCTCTT 1901 Query 1845 AAGAAGTTGCTTAGAGTATCCAGATAAGTCTGAGAAGGAAACTGTAGATGTCAATGGTTT 1904 |||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1902 AAGAAGTTCCTTAGAGTATCCAGATAAGTCTGAGAAGGAAACTGTGGATATCAATGGTTT 1961 Query 1905 CCATGTTCTTTCCTCTCAGGTTACTTCAGTGAAGCAAATTTTCGAGGAGCATCCAGATAT 1964 | | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1962 CAAGGTTCTTTCTTCTCAGGTTACTTCAGTGAAGCGAATTTTCGAGGAGCATCCAGATAT 2021 Query 1965 TGCAGAAGATTTCAGATCAAAGAACCAAGTAGTGAAGACAGAATACATGAATGTCCTTCT 2024 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2022 AGCAGAAGATTTCAGATCAAAGAACCAAGTAGTGAAGACAGAATACATGAGTGTCCTTCT 2081 Query 2025 TAGGGTCATCCAGACAATGGCTAAGCCGCCACAGAGTATCTCAGAGACTGAGCTAAGCAA 2084 |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 2082 TAGGGTCATCGAGACAATGGCTAAACCGCCACAGAGTATTTCAGAGACTGAGCTAAGCAA 2141 Query 2085 CGTTCATAGCGAATTGACCGAGCTGATGGAAGTAGGTTTCAAGGTGGAGTGGTTGAAGAC 2144 |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| | Sbjct 2142 CGTTCATAGCGAATTGACCGAGCTGACGGAAGTAGGTTTTAAGTTGGAGTGGTTGAAGGC 2201 Query 2145 AAAACTTGAGGAGGTTTCCGTGGAGTTGAAGAAAGCAAATGCTGATGGGTGTCGGATTCA 2204 ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| Sbjct 2202 AAAACTTGAGGAGGTTTGCGTGGCGTTTAAGAAAGCAAATGCTGATGGGTGTCGGATTCA 2261 Query 2205 ACAACTTGAGGAACACGTCAAGAATCTTGAGCTGACTGTGTCAGATCTCAAAGCTGAACT 2264 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | Sbjct 2262 ACAACTTGAGGAACACGTCAAGAATCTTGAGCAGACTGTGTCAGATCTCAAAGTTGAAAT 2321 Query 2265 GGACAAAGAGAAGGCCAAATCTACTAGTGATACTGCTAAATTTTTGTCGTTGGAGGATAC 2324 |||||| |||||||| ||||||||| | || ||| ||||||||||||||||||| Sbjct 2322 GGACAAGGAGAAGGCTAAATCTACT-G-----CT---AAAGTTTTGTCGTTGGAGGATAC 2372 Query 2325 ATTGTCTGATCTCAAAACTGAACTCGTTAAGGAGAAGGCAAAAAATGCTAGTGCTACTGA 2384 |||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||| Sbjct 2373 ATTGTCTGATCTCAAAACTGAACTGGGTAAGGAGAAGGCAAAGAATGCTACTGCTACTGA 2432 Query 2385 TAAATTTTTGTTGTTGAAGGAGACTTATTGTGATCTCAAAGTTGAACTGGACAAGGAGAA 2444 ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| Sbjct 2433 TAAATTTTTGTTGTTGAAGGATACTTATTCTGATCTCAAAGTTGAACTGGAGAAGGAGAA 2492 Query 2445 GGCTAAATCTACTAGGGCTGCTGCTAAAGTTTTGTCATTGAAAGAGACTTTGTCTGATCT 2504 || ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 2493 AGCCAAATCTACTAGTGCTGCTGCTAAAGTTTTGTCGTTGAAAGAGGCTTTGTCTGATCT 2552 Query 2505 CAAAGTTGAACTGGAT---CAGAAGATAGAAAATTCTGCTACTAGTACTGCTAATGTTTT 2561 |||||||||||||||| |||||||||| |||||||||||| | |||||||||||||| Sbjct 2553 CAAAGTTGAACTGGATGATCAGAAGATAGTAAATTCTGCTAC-A--ACTGCTAATGTTTT 2609 Query 2562 GTCGTGGGAAGATGATGATGATTTATTTTCACATACTAACTGTCTAGGAATTCAGCAGAA 2621 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2610 ATCGTGGGAAGATGATGATGATTTATTTTCACATACTAACTGTTTAGGAATTCAGCAGAA 2669 Query 2622 GACAAATGCTTACAAAAGAATAAACTGA 2649 ||||||||| |||||||||||||||||| Sbjct 2670 GACAAATGCCTACAAAAGAATAAACTGA 2697 Score = 1262 bits (683), Expect = 0.0 Identities = 805/865 (93%), Gaps = 4/865 (0%) Strand=Plus/Plus Query 1 ATGGAGAATCATGAGCAGACGAGTTTCAGGTTTGAGATAGATAACTTCTTGGAGAAGCGA 60 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 76 ATGGAGAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGA 135 Query 61 GATGTGATATCTCCTAAT-TTCATAAGCGGGGGATGCGAATGGTTTGTTAGGGTTTGGCA 119 |||| |||||||||| || ||||||||||| ||||||||||||||| ||||||||||||| Sbjct 136 GATGCGATATCTCCT-ATATTCATAAGCGGCGGATGCGAATGGTTTATTAGGGTTTGGCA 194 Query 120 AATTGAAGATCACTTGGCTGTGAGTCTGAGCGTTCCGAATCTTGAATCCTTACTACATGG 179 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| Sbjct 195 AATTGAAGATCACTTGGCTGTGACTCTGAGCGTTCCGAATCTTGAATCCTTACGATATGG 254 Query 180 ATGCGAAAGGAGAGCTAAGTATTCATTCATTGTGTTGAATCAATCGGGCAAAGTGCTCGG 239 ||| ||||||||| | ||||||||||||||||||||||||||||| |||| || |||| | Sbjct 255 ATGGGAAAGGAGAACCAAGTATTCATTCATTGTGTTGAATCAATCAGGCAGAGAGCTC-G 313 Query 240 AA-GAACATTTGAAGCAGAAGGTCTCTTCTGTTTTGAGTTATTAGATTGGTGTCATCCCA 298 || |||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||| Sbjct 314 AACGAACATTTGAAGTAGAAGGTCTCTTCTGTACTGAATTATTAGAATGGTGTCATCCCA 373 Query 299 AAGTAATGCCTATGACCAAGCTTCAAGAAGATTGTTTAGAAAATAACAAACTGATCATTG 358 |||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 374 AAGTAATGCCTACGAACAAGCTTCAAGAAGTTTGTTTAGAAAATAATAAACTGATCATTG 433 Query 359 AAGTCCAATTAAAAGTAGTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGAAGA 418 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 434 AAGTCCAAGTAAAAGTACTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGGAGA 493 Query 419 TGTTCAATATTGAGGGTTTCGATGTTCTCTATACTCAGGTCTCTTGGGTTAGCTGGATTT 478 |||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||| Sbjct 494 TGTTCAATATTGAGGGTTTCGATGTTCTCTATACTCAGGTGTCTCGGGTCAGCTGGCTTT 553 Query 479 TCGGGGAGCATCCAGACATTGCAGTAGATGTCAGAATAAAGAACCAGTTGTTGAGGACAG 538 ||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 554 TCGTGGAACATCCAAACATTGCAGTAGATGTCAGAATAAAGAACCAGTTGGTGAGGACGG 613 Query 539 CATACATGAATGTTCTCCTCGGTCTTATAGAGACGCTAGATAGGCCTCCACGGAGTCTTT 598 ||||||| |||||||||||||||||||| ||||| ||||| ||| ||||||||||||||| Sbjct 614 CATACATTAATGTTCTCCTCGGTCTTATCGAGACACTAGACAGGTCTCCACGGAGTCTTT 673 Query 599 CAGAGACTGAGCTTAGAGACGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCA 658 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 674 CAGAGACTGACCTTAGAGACGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCA 733 Query 659 AGGTGGATTGGTTAAAGACAAAGCTTGAGGAGGTTTCCTTGGTGAGGAAGGATGAAATTT 718 |||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||| Sbjct 734 AGGTAGATTGGTTAAAGAAAAAGCTTGAGGAGGTTTCCTTGGCGAGGAAGAATGACATTT 793 Query 719 CTGATAGTTCTCAGGTCCAAGAACTCGAGGAACATGTCAGGAATCTCAAACTTGAACTGG 778 ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 794 CTGATGGTTCTCAGGTGGAAGAACTCGAGGAACATGTCAAGAATCTCAAACTTGAGCTGG 853 Query 779 ACAATGAGAAGACCAAATCTTCTATTGCTTCTGATAGAGTTTTGTTGTTGGAGAAAGAGG 838 |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 854 ACAATGAGAAGATTAAATCTTCTACTGCTTCTGAAAGAGTTTTGTTGTTGGAGAAAGAGG 913 Query 839 TGTCAGATCTCAAAATTGAACTGGA 863 ||| ||||||||||||||||||||| Sbjct 914 TGTTAGATCTCAAAATTGAACTGGA 938 > AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685805-17689928 REVERSE LENGTH=2309 Length=2309 Score = 67.6 bits (36), Expect = 6e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1250 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAAGCAG 1288 ||||||||||||||||||||||||||||||||||| ||| Sbjct 2125 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAG 2163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 131537724546 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5