BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321927
Length=2649
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679... 2435 0.0
AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685... 67.6 6e-10
> AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679887-17685187
REVERSE LENGTH=2697
Length=2697
Score = 2435 bits (1318), Expect = 0.0
Identities = 1625/1768 (92%), Gaps = 42/1768 (2%)
Strand=Plus/Plus
Query 903 AGAAGCATGCAACTTGTTCTGCGCTGAGGTCTCAGACCCGTGTTTCTCTAAGACATTGCC 962
|||||||||||||||||||||| | ||||||||| || ||||||||||||||| |||||
Sbjct 951 AGAAGCATGCAACTTGTTCTGCCCCGAGGTCTCAAACTGGTGTTTCTCTAAGACGTTGCC 1010
Query 963 TCTTAGCACGCTTGAAGAAGAAGGGTTTCTGGAGAACAACAAACTAACCATTGAAATCTA 1022
|||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1011 TCTTAGCAAGCTTCAAGAAAAAGGGTTTCTGGAGAACAACAAACTAACCATTGAAGTCTA 1070
Query 1023 CATTAAAGTTAAATCAGTGAGTTGGATCTTCGTGAAACACCCAGACATTGCAGTAGGTTT 1082
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||
Sbjct 1071 CATTAAAGTTAAATCAGTGAGTTGGATCTTCGTGAAGCATCCAGACACTGCAGTACATTT 1130
Query 1083 CAGACCAAAGAACAAACTGGTGAAGAAAGCATATATGAATATTCTCCTCGGCCTCATCGA 1142
| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
Sbjct 1131 CTTACCAAAGAACAAACTGGTGAAGAAAGCACATATGAATACTCTCCTCTGCCTCATCAA 1190
Query 1143 GACACTGCGCAAGCCTCCTCTAAGCTTGTCTGAGACTGAGCTAAGAAACGCTCACAGCGA 1202
||||||| | |||||||||||||| |||||||||||||||||||| || ||| |||||||
Sbjct 1191 GACACTGAGAAAGCCTCCTCTAAGTTTGTCTGAGACTGAGCTAAGCAATGCTTACAGCGA 1250
Query 1203 GTTGACTAAGTTGATGGAAGTGA-GCTTCAAGCTAGACTGGTTAAAAACAAAGCTTGAGG 1261
|||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||
Sbjct 1251 GTTGACTAAGTTAACGGAAGT-AGGCTTCAAGCTAGACTGGTTAAAGTCAAAGCTTGAGA 1309
Query 1262 AGGTTTCCTTGGAGAGGAAGAAAGCAGTTTCTGATGG---T----TCT----C-A-GA-T 1307
||| ||||||||||||||||||| ||||||||||||| | ||| | | || |
Sbjct 1310 AGGCTTCCTTGGAGAGGAAGAAATCAGTTTCTGATGGTTCTCAGATCTCCGCCTACGATT 1369
Query 1308 --AGGATCAAACAAATCTAAAAGTAATTCCTCTGTTTCCTCCTCCCTAGCTCAAAGAAAT 1365
|||||||||||||||| ||||| ||| ||||||| ||||| || ||| ||||| |
Sbjct 1370 CAAGGATCAAACAAATCTCCAAGTATTTCGTCTGTTTTCTCCT-CC---CTCGAAGAACT 1425
Query 1366 ACCAAAACCCTaaaaaaaaaTAAACAGATGGGAACGCAATTCCGCAAAGCTTTAACTTTG 1425
||||||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1426 ACCAAAA-CCT--TAAAAAGTAAACAGATGGGGACGCAATTCCGCAAAGCTTTAACTTTG 1482
Query 1426 ACGGTAACCAACTTCTCCCAAAAGAGTTCTCCAATTAACTCTCCTCCGTTCCCTAGCGGT 1485
|||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||
Sbjct 1483 ACGGTAACCAACTTCTCCCAAAAGAGCTCTCCGATAAACTCTCCTCCTTTCCCAAGCGGT 1542
Query 1486 GGCTGCGATTGGTATATTAAAGTTTATCCTAAGGGCAGTGTTGATGATAATTACTTGTCT 1545
|||||| |||||||||||||| ||||||| ||||| |||| |||||||||||||||||||
Sbjct 1543 GGCTGCAATTGGTATATTAAATTTTATCCCAAGGGAAGTGCTGATGATAATTACTTGTCT 1602
Query 1546 CTGTTCCTGTCTCCTGATGATCCTAAATCACTTGGACTTAATTGGAAAAGGAGAGCTAAT 1605
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TTGTTCCTGTCCCCTGATGATCCTAAATCACTTGGACTTAATTGGAAAAGGAGAGCTAAT 1662
Query 1606 TTTTACTTTGTTTTGCTGAATCAATCAGGCAAAGAACTTCATAGAACACCTGAAATAGGT 1665
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1663 TTTTACTTTGTTTTGCTGAATCAATCAGGCAAAGAACTTCATCGAACACCTGAAATAGGT 1722
Query 1666 GATCAAGTG-TTTTGTGATGACTCACTAAGCTGGGGTTTTCCACAGACACTGCCTCGAAA 1724
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1723 GATCAA-TGGTTTTGTGATGACTCACTAAGCTGGGGTTTTCCACAGACATTGCCTCGAAA 1781
Query 1725 AAAGCTTCTAGACAAAATCTTTCTAGATAACGATAGATTCAACATTGAAATCTATATTAA 1784
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1782 AAAGCTTCTAGACAAAATCTTTCTTGATAACGACAGATTCAACATTGAAATCTATATTAA 1841
Query 1785 AGTTATTGAAGTTGTTGAAGGATATCATATGTTTCCAGCTTCATTCACTAATAAGCTCTT 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AGTTATTGAAGTTGTTGAAGGATATCATATGTTTCCAGCTTCATTCACTAATAAGCTCTT 1901
Query 1845 AAGAAGTTGCTTAGAGTATCCAGATAAGTCTGAGAAGGAAACTGTAGATGTCAATGGTTT 1904
|||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1902 AAGAAGTTCCTTAGAGTATCCAGATAAGTCTGAGAAGGAAACTGTGGATATCAATGGTTT 1961
Query 1905 CCATGTTCTTTCCTCTCAGGTTACTTCAGTGAAGCAAATTTTCGAGGAGCATCCAGATAT 1964
| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1962 CAAGGTTCTTTCTTCTCAGGTTACTTCAGTGAAGCGAATTTTCGAGGAGCATCCAGATAT 2021
Query 1965 TGCAGAAGATTTCAGATCAAAGAACCAAGTAGTGAAGACAGAATACATGAATGTCCTTCT 2024
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2022 AGCAGAAGATTTCAGATCAAAGAACCAAGTAGTGAAGACAGAATACATGAGTGTCCTTCT 2081
Query 2025 TAGGGTCATCCAGACAATGGCTAAGCCGCCACAGAGTATCTCAGAGACTGAGCTAAGCAA 2084
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2082 TAGGGTCATCGAGACAATGGCTAAACCGCCACAGAGTATTTCAGAGACTGAGCTAAGCAA 2141
Query 2085 CGTTCATAGCGAATTGACCGAGCTGATGGAAGTAGGTTTCAAGGTGGAGTGGTTGAAGAC 2144
|||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |
Sbjct 2142 CGTTCATAGCGAATTGACCGAGCTGACGGAAGTAGGTTTTAAGTTGGAGTGGTTGAAGGC 2201
Query 2145 AAAACTTGAGGAGGTTTCCGTGGAGTTGAAGAAAGCAAATGCTGATGGGTGTCGGATTCA 2204
||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2202 AAAACTTGAGGAGGTTTGCGTGGCGTTTAAGAAAGCAAATGCTGATGGGTGTCGGATTCA 2261
Query 2205 ACAACTTGAGGAACACGTCAAGAATCTTGAGCTGACTGTGTCAGATCTCAAAGCTGAACT 2264
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 2262 ACAACTTGAGGAACACGTCAAGAATCTTGAGCAGACTGTGTCAGATCTCAAAGTTGAAAT 2321
Query 2265 GGACAAAGAGAAGGCCAAATCTACTAGTGATACTGCTAAATTTTTGTCGTTGGAGGATAC 2324
|||||| |||||||| ||||||||| | || ||| |||||||||||||||||||
Sbjct 2322 GGACAAGGAGAAGGCTAAATCTACT-G-----CT---AAAGTTTTGTCGTTGGAGGATAC 2372
Query 2325 ATTGTCTGATCTCAAAACTGAACTCGTTAAGGAGAAGGCAAAAAATGCTAGTGCTACTGA 2384
|||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||
Sbjct 2373 ATTGTCTGATCTCAAAACTGAACTGGGTAAGGAGAAGGCAAAGAATGCTACTGCTACTGA 2432
Query 2385 TAAATTTTTGTTGTTGAAGGAGACTTATTGTGATCTCAAAGTTGAACTGGACAAGGAGAA 2444
||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 2433 TAAATTTTTGTTGTTGAAGGATACTTATTCTGATCTCAAAGTTGAACTGGAGAAGGAGAA 2492
Query 2445 GGCTAAATCTACTAGGGCTGCTGCTAAAGTTTTGTCATTGAAAGAGACTTTGTCTGATCT 2504
|| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2493 AGCCAAATCTACTAGTGCTGCTGCTAAAGTTTTGTCGTTGAAAGAGGCTTTGTCTGATCT 2552
Query 2505 CAAAGTTGAACTGGAT---CAGAAGATAGAAAATTCTGCTACTAGTACTGCTAATGTTTT 2561
|||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||
Sbjct 2553 CAAAGTTGAACTGGATGATCAGAAGATAGTAAATTCTGCTAC-A--ACTGCTAATGTTTT 2609
Query 2562 GTCGTGGGAAGATGATGATGATTTATTTTCACATACTAACTGTCTAGGAATTCAGCAGAA 2621
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2610 ATCGTGGGAAGATGATGATGATTTATTTTCACATACTAACTGTTTAGGAATTCAGCAGAA 2669
Query 2622 GACAAATGCTTACAAAAGAATAAACTGA 2649
||||||||| ||||||||||||||||||
Sbjct 2670 GACAAATGCCTACAAAAGAATAAACTGA 2697
Score = 1262 bits (683), Expect = 0.0
Identities = 805/865 (93%), Gaps = 4/865 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATCATGAGCAGACGAGTTTCAGGTTTGAGATAGATAACTTCTTGGAGAAGCGA 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 76 ATGGAGAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGA 135
Query 61 GATGTGATATCTCCTAAT-TTCATAAGCGGGGGATGCGAATGGTTTGTTAGGGTTTGGCA 119
|||| |||||||||| || ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 136 GATGCGATATCTCCT-ATATTCATAAGCGGCGGATGCGAATGGTTTATTAGGGTTTGGCA 194
Query 120 AATTGAAGATCACTTGGCTGTGAGTCTGAGCGTTCCGAATCTTGAATCCTTACTACATGG 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 195 AATTGAAGATCACTTGGCTGTGACTCTGAGCGTTCCGAATCTTGAATCCTTACGATATGG 254
Query 180 ATGCGAAAGGAGAGCTAAGTATTCATTCATTGTGTTGAATCAATCGGGCAAAGTGCTCGG 239
||| ||||||||| | ||||||||||||||||||||||||||||| |||| || |||| |
Sbjct 255 ATGGGAAAGGAGAACCAAGTATTCATTCATTGTGTTGAATCAATCAGGCAGAGAGCTC-G 313
Query 240 AA-GAACATTTGAAGCAGAAGGTCTCTTCTGTTTTGAGTTATTAGATTGGTGTCATCCCA 298
|| |||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||
Sbjct 314 AACGAACATTTGAAGTAGAAGGTCTCTTCTGTACTGAATTATTAGAATGGTGTCATCCCA 373
Query 299 AAGTAATGCCTATGACCAAGCTTCAAGAAGATTGTTTAGAAAATAACAAACTGATCATTG 358
|||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 374 AAGTAATGCCTACGAACAAGCTTCAAGAAGTTTGTTTAGAAAATAATAAACTGATCATTG 433
Query 359 AAGTCCAATTAAAAGTAGTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGAAGA 418
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 434 AAGTCCAAGTAAAAGTACTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGGAGA 493
Query 419 TGTTCAATATTGAGGGTTTCGATGTTCTCTATACTCAGGTCTCTTGGGTTAGCTGGATTT 478
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||
Sbjct 494 TGTTCAATATTGAGGGTTTCGATGTTCTCTATACTCAGGTGTCTCGGGTCAGCTGGCTTT 553
Query 479 TCGGGGAGCATCCAGACATTGCAGTAGATGTCAGAATAAAGAACCAGTTGTTGAGGACAG 538
||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 554 TCGTGGAACATCCAAACATTGCAGTAGATGTCAGAATAAAGAACCAGTTGGTGAGGACGG 613
Query 539 CATACATGAATGTTCTCCTCGGTCTTATAGAGACGCTAGATAGGCCTCCACGGAGTCTTT 598
||||||| |||||||||||||||||||| ||||| ||||| ||| |||||||||||||||
Sbjct 614 CATACATTAATGTTCTCCTCGGTCTTATCGAGACACTAGACAGGTCTCCACGGAGTCTTT 673
Query 599 CAGAGACTGAGCTTAGAGACGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCA 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CAGAGACTGACCTTAGAGACGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCA 733
Query 659 AGGTGGATTGGTTAAAGACAAAGCTTGAGGAGGTTTCCTTGGTGAGGAAGGATGAAATTT 718
|||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 734 AGGTAGATTGGTTAAAGAAAAAGCTTGAGGAGGTTTCCTTGGCGAGGAAGAATGACATTT 793
Query 719 CTGATAGTTCTCAGGTCCAAGAACTCGAGGAACATGTCAGGAATCTCAAACTTGAACTGG 778
||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 794 CTGATGGTTCTCAGGTGGAAGAACTCGAGGAACATGTCAAGAATCTCAAACTTGAGCTGG 853
Query 779 ACAATGAGAAGACCAAATCTTCTATTGCTTCTGATAGAGTTTTGTTGTTGGAGAAAGAGG 838
|||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 854 ACAATGAGAAGATTAAATCTTCTACTGCTTCTGAAAGAGTTTTGTTGTTGGAGAAAGAGG 913
Query 839 TGTCAGATCTCAAAATTGAACTGGA 863
||| |||||||||||||||||||||
Sbjct 914 TGTTAGATCTCAAAATTGAACTGGA 938
> AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685805-17689928
REVERSE LENGTH=2309
Length=2309
Score = 67.6 bits (36), Expect = 6e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1250 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAAGCAG 1288
||||||||||||||||||||||||||||||||||| |||
Sbjct 2125 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAG 2163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131537724546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5