BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321928
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685... 942 0.0
> AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685805-17689928
REVERSE LENGTH=2309
Length=2309
Score = 942 bits (510), Expect = 0.0
Identities = 692/776 (89%), Gaps = 27/776 (3%)
Strand=Plus/Plus
Query 1 ATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGAT 137
Query 61 ACGATAGCGTCTCAGGCATTCGTGAGTGGCGGATGCGAATGGTTCATCTACCTCTATTC- 119
|||||||||| |||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct 138 GTGATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGAATGGTTCCTTTACCTCTATCCG 197
Query 120 ---GG--AG-G-------G-TGACCACATGTCTTTGT-TCCTATACGTTGCAAATCGTAC 164
|| || | | ||| ||||||||||||| | || | |||||||||| |||
Sbjct 198 AAGGGACAGAGTCTTAATGATGATCACATGTCTTTGTAT-CTGTCCGTTGCAAATAGTAA 256
Query 165 ATCATTGGGAAGTGGATGGAAACGGAGTGCTAACTTTTACTTCTCTGTTCTGAATCAATC 224
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 257 ATCCTTGGGAAGTGGATGGAAACGGAGTGCTAAATTTTACTTCTCTGTGCTGAATGAATC 316
Query 225 TGAAAAAGAGCTCTACAGATCACCTGTTGGACAAGAACCCTATTTGTTTCGCGTTGAGGG 284
||| ||||| |||||||||||| || || | |||||| || | ||||| ||||| |||
Sbjct 317 TGACAAAGAACTCTACAGATCAACTATTAGCCAAGAATTCTGTCTGTTTTGCGTTCAGGC 376
Query 285 TCCAGGCTGGGGTTTCCGAAA-GATCTTGCCTCTTAGCAAGTTTGAGGAAAAAGGGTTTT 343
|| || ||||||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 377 TCTAGCCTGGGGTATCCGAAAGGCT-TTGCCTCTTAGCAAGTTTGAGGAAAAAGGGTTTT 435
Query 344 TGGAGAAGGACAGACTCATCATTGAAGTCTACATC-AAAGTTGTTGAAGCTGTGGACGGA 402
|||||||||||| ||||||| |||||||||||||| ||| || ||||||| ||||| |||
Sbjct 436 TGGAGAAGGACAAACTCATCGTTGAAGTCTACATCAAAAATT-TTGAAGCAGTGGATGGA 494
Query 403 GAAGGCGGAGGCGTATCAAAGAA-GA--A--A-GAGACTGTGGATATTATCAATTCCGAG 456
||||||||||| ||||||||||| || | | |||||||| || |||||| |||| ||
Sbjct 495 GAAGGCGGAGGTGTATCAAAGAAGGAGGAGGAGGAGACTGTCGAGATTATCGGTTCCCAG 554
Query 457 GATTATGCTTCTCAGGCAAGTTTAAAAGGATCCGTTACTTTAATGAGAAAGATATTCGCA 516
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 555 GATTATGCTTCTCAGGCAAGTTTCAAAGGATCCGTTACTTTAGTGAGAAAGATATTCGCA 614
Query 517 GAGCACCCAGAAATTGCAGAAGAGTTCAAACCAAAGAACCAAGTGTTCAAGAAAGAATAC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GAGCACCCAGAAATTGCAGAAGAGTTCAAACCAAAGAACCAAGTGTTCAAGAAAGAATAC 674
Query 577 ATGAATATCCTAAGAAACGCTTACAGCAAGGTTAGTGAGCTAGCGGAAGTAAAGATGGAC 636
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 675 ATGAATATCCTAAGAAACGCTTACCGCAAGGTTAGTGAGCTAGCGGAAGTAAAGATGGAC 734
Query 637 TGGGTGAAGTCAAAGATTGGTGAAGTTTCCTTGGAGAGAAAGAAAGGATATCATGAGACT 696
||||||||||||||||||| |||||||||||||||| ||||||| || || ||||| |
Sbjct 735 TGGGTGAAGTCAAAGATTGAAGAAGTTTCCTTGGAGATAAAGAAACGAAATGATGAGGTT 794
Query 697 AGTGAAGTTCCCTTGGATAATAAGATAGCAgatgaagatgatgatgatgatgatga 752
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 795 AGTGAAGTTCCCTTGGATAATAAGATAGCAGATGATGATGATGATGATTATGATGA 850
Score = 708 bits (383), Expect = 0.0
Identities = 482/529 (91%), Gaps = 10/529 (2%)
Strand=Plus/Plus
Query 1707 TGAGGTTTCCTTGAAGGGCAAGAAACGAGATGATGCTGATGGGTCTCGGCTCCAACAACT 1766
||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 1781 TGAGGTTTCCTTGAAGGACAAGAAACGAGATGATGCTGATGAGTCTCGGTTCCAAAAACT 1840
Query 1767 AGAGGAACGCCTCAAGAATCTTGAGTTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGA 1826
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1841 AGAGGAACGCCTCAAGAATCTCGAGTTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGA 1900
Query 1827 GGAAGTTTCGTTGGACAAGAAGAAAGCAGATGCTGATTTGTCTCGGGTCCAACAACTAGA 1886
|||||||||| | | || |||||||||||||||||| |||||||||||||| ||||||
Sbjct 1901 GGAAGTTTCGATAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGGTCCAACGACTAGA 1960
Query 1887 GGAACGCCTCAAGAATCTTGAGCTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGAGGA 1946
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1961 GGAACGCCTCAAGAATCTTGAGCTAATGGATTTGGACTGTTTGAAATCAAAGCTTGAGTT 2020
Query 1947 AGTTTC-ATTGGAGAATAAGAAAGCAAATGCTGATTGGTCTCGGGTCCAACAACTCGAGG 2005
|||||| | | |||||||||||||| |||||||| |||||||| |||||| ||| ||||
Sbjct 2021 AGTTTCGA-TAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGATCCAACGACTAGAGG 2079
Query 2006 AAC--G-T---AATCTTGAGCTTATGGAATTGGACTG-TTTGAAGTCAAAGCTTGAGGAG 2058
||| | | || |||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 2080 AACGTGTTAAGAAACTTGAGCTGATGGAATTGGAC-GATTTGAAGTCAAAGCTTGAGGAG 2138
Query 2059 GTTTTCTTGGAGAGAAAGAAATCAGACGATGATGATAGGTCTCGGGTCCAACAAATCGAG 2118
|||| ||||||||| |||||||||||||||| | |||||||||||||| | ||| |||||
Sbjct 2139 GTTTCCTTGGAGAGGAAGAAATCAGACGATGCTTATAGGTCTCGGGTCTACCAACTCGAG 2198
Query 2119 CAATGCTTCAAGAACCTTGAGCTGATGGTGTTGGACCTCAAAGTTGAACTGGACaaaaaa 2178
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 2199 GAATGCTTCAAGAACCTTGAGCTGATGGTGTTGGATTTCAAAGTTGAACTGGACAAGAAA 2258
Query 2179 aaGGACAAATCTTGTGATGATGGATTTTTGTTGGTCGACGAGTTTGCTT 2227
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 AAGGACAAATCTTGTGATGATGGATTTTTGTTGGTCGACGAGTTTGCTT 2307
Score = 538 bits (291), Expect = 9e-152
Identities = 408/464 (88%), Gaps = 10/464 (2%)
Strand=Plus/Plus
Query 1182 GAATCATCAGAAGACGAGTTGTTTCACCTTTGAGATAGATAACTTTTCCGAGAAGAAATA 1241
||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||
Sbjct 1235 GAATCATCAGAAGACGA---GTTTCACCTTTGAGATAGAAAACTTTTCAGAGAGGAAATA 1291
Query 1242 TGTGATA-GCGTCTCCTATATTCATAAGCGGCCAATGCCAATGGTTTGTTAAAGTTTATA 1300
| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1292 TTTGATATG-GTCTCCTATATTCATAAGCGGCCAATGCCATTGGTTTGTTAAAGTTTATC 1350
Query 1301 CGAATGGAT-ACTTTAACAAAGATCACGTGTCTGTATATCTTCACGTTGCGAATCCTCAA 1359
||| | | || |||| | |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1351 CGA-TAAAAGACAATAACTACGATCACGTGTCTGTGTATCTGCACGTTGCGAATCCTCAA 1409
Query 1360 TCATTACGACCTGGATGGAAAAGGAGAGTTAATTATTCATTCACTCTGTTTAATCAATCA 1419
||| |||||||||||||||||||||||| | ||| |||||| | ||||| ||||||||||
Sbjct 1410 TCACTACGACCTGGATGGAAAAGGAGAGCTCATTTTTCATTGATTCTGTCTAATCAATCA 1469
Query 1420 GGCAAAGAGCTCCAAAGAACACCTGAATCATGCGACCTGTTCTGCACTGAGGTCTCAGCC 1479
||||||||| || ||| | || |||| ||||||||| |||||||||||||| | ||| |
Sbjct 1470 GGCAAAGAGGTCAAAATACCATCTGATTCATGCGACTTGTTCTGCACTGAGTTGTCATC- 1528
Query 1480 TGGGGTTATCCCAAACTATTGCCTCTTAGCAAGCTTAAAGAAGAAGGGTTTTTAGAGAAC 1539
| | |||||||||| ||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1529 -GAG-TTATCCCAAAATATTGCCTCCTATCAAGCTTAAAGAAGAAGGGTTTTTGGAGAAC 1586
Query 1540 GACAAACTGATCATTAAGGTGGAAGTAAAAGTAGTTGAAGTTGTTCATGTAGGAGAGGTA 1599
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1587 GACAAACTGATCATTACGGTGGAAGTAAAAGTAGTTGAAGTTGTTCATCCAGGAGAGTTA 1646
Query 1600 ACTGGGAAGGAGATGGTAGATTTCAAGGGTTTCCAGGTTCTTTA 1643
|||||||||||||||||||| ||||||| || |||| ||||||
Sbjct 1647 ACTGGGAAGGAGATGGTAGAATTCAAGGAATTACAGGATCTTTA 1690
Score = 296 bits (160), Expect = 6e-79
Identities = 237/274 (86%), Gaps = 5/274 (2%)
Strand=Plus/Plus
Query 1738 GATGCTGATGGGTCTCGGCTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGTTGATG 1797
||||||||| |||||||| |||||| |||||||||||||||||||||||||||| | |||
Sbjct 1929 GATGCTGATAGGTCTCGGGTCCAACGACTAGAGGAACGCCTCAAGAATCTTGAGCTAATG 1988
Query 1798 GAGTTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGTTGGACAAGAAGAAAGCAGAT 1857
|| ||||||||||||||||||||||||||| ||||||| | | || ||||||||||||
Sbjct 1989 GATTTGGACTGTTTGAAATCAAAGCTTGAGTTAGTTTCGATAAAGAATAAGAAAGCAGAT 2048
Query 1858 GCTGATTTGTCTCGGGTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGCTGATGGAG 1917
|||||| ||||||| |||||| |||||||||||| | ||||| ||||||||||||||
Sbjct 2049 GCTGATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAA 2108
Query 1918 TTGGACTG-TTTGAAATCAAAGCTTGAGGAAGTTTCATTGGAGAATAAGAAAGCA-A--A 1973
|||||| | |||||| |||||||||||||| ||||| ||||||| |||||| || | |
Sbjct 2109 TTGGAC-GATTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGA 2167
Query 1974 TGCTGATTGGTCTCGGGTCCAACAACTCGAGGAA 2007
|||| || ||||||||||| | ||||||||||||
Sbjct 2168 TGCTTATAGGTCTCGGGTCTACCAACTCGAGGAA 2201
Score = 291 bits (157), Expect = 3e-77
Identities = 303/369 (82%), Gaps = 28/369 (8%)
Strand=Plus/Plus
Query 1803 GGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGTT---GGACAAGAAGA-AAGCA-GAT 1857
|||| ||||||| ||||| | | | || ||||| || ||||||||| | || | |||
Sbjct 1757 GGACAGTTTGAAGTCAAATCATCATGAGGTTTCCTTGAAGGACAAGAA-ACGAG-ATGAT 1814
Query 1858 GCTGATTTGTCTCGGGTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGCTGATGGAG 1917
|||||| ||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1815 GCTGATGAGTCTCGGTTCCAAAAACTAGAGGAACGCCTCAAGAATCTCGAGTTGATGGAG 1874
Query 1918 TTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTC-ATTGGAGAATAAGAAAGCAAATGC 1976
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1875 TTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGATAA-AGAATAAGAAAGCAGATGC 1933
Query 1977 TGATTGGTCTCGGGTCCAACAACTCGAGGAACG--T-AA---TCTTGAGCTTATGGAATT 2030
|||| ||||||||||||||| ||| |||||||| | || ||||||||| ||||| ||
Sbjct 1934 TGATAGGTCTCGGGTCCAACGACTAGAGGAACGCCTCAAGAATCTTGAGCTAATGGATTT 1993
Query 2031 GGACTGTTTGAAGTCAAAGCTTGAGG-AGGTTTTCT-TGGAGAGA-AAGAAATCAGACGA 2087
|||||||||||| |||||||||||| || ||| | | ||| | |||||| ||||
Sbjct 1994 GGACTGTTTGAAATCAAAGCTTGAGTTAG-TTT-CGATAAAGA-ATAAGAAAGCAGA--- 2047
Query 2088 TGATGATAGGTCTCGGGTCCAACAAATCGAGCAA--TGCTTCAAGAACCTTGAGCTGATG 2145
|| ||||||||||||| |||||| | | ||| || || || ||||| ||||||||||||
Sbjct 2048 TGCTGATAGGTCTCGGATCCAACGACTAGAGGAACGTG-TT-AAGAAACTTGAGCTGATG 2105
Query 2146 GTGTTGGAC 2154
| ||||||
Sbjct 2106 GAATTGGAC 2114
Score = 289 bits (156), Expect = 1e-76
Identities = 190/206 (92%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 763 gatgatgatgatgatgatgatgatgaATCTTGGGCCCAAGACCTCGAGGAACGCCTCAAG 822
|||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||
Sbjct 825 GATGATGATGATGATGATTATGATGAA---TGGGAGCAAGACATCGAGGAACGCCTCAAG 881
Query 823 AATCTCGAGGGGATGGAATTTGACTTCAAGATGGACTGTTTGAAGTCAAAACTTGATGAA 882
||||| ||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||
Sbjct 882 AATCTTGAGGGGATGGAATTTGACTCCAAGTTGGACAGTTTGAAGTCAAAGCTTGATGAA 941
Query 883 ATTTCCTTAGAGAGGAAGATATCATATGATGCTGATCGGTCTCGGTTCCAGCAACTCGAG 942
||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 942 ATTTCCTTAGAGAGGAAGAAATCATATGATGCTGATGGGTCTCGGGTCCAGCAACTCGAG 1001
Query 943 GAACGAGTCAAGGATCTTGAGCTGAT 968
||||||||||||||| ||||||||||
Sbjct 1002 GAACGAGTCAAGGATATTGAGCTGAT 1027
Score = 206 bits (111), Expect = 1e-51
Identities = 154/172 (90%), Gaps = 13/172 (8%)
Strand=Plus/Plus
Query 1012 GAA-TCAAAGCTTGAGGAAGTTTCTTTGGAGAAGAAGAAGACTGCAGATGCTGATGGGTC 1070
||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1031 GAAGTCAAAGCTTGAGGAAGTTTCCTCGGAGAAGAAGAAGAAAGCAGATGCTGATGGG-- 1088
Query 1071 TCAGGTCCAAGAACTAGAGGATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAA 1130
|| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TC---T-------CTAGAGGATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAA 1138
Query 1131 AGTTGAACTGGACAACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTG 1182
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGTTGAAGTGGACAACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTG 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110591800635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5