BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321945
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42660.1 | Symbols: | Homeodomain-like superfamily protein ... 1229 0.0
> AT2G42660.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:17767050-17768290 REVERSE LENGTH=815
Length=815
Score = 1229 bits (665), Expect = 0.0
Identities = 741/777 (95%), Gaps = 8/777 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGGGACTTCTTCGCCGGGAAAATGCTCCATGTGGCTTGACCTGAACAGAGAAGAG 60
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 33 ATGGCCGGGAGATCTTCGCCGGGAAAATGCTCCACGTGGCTTGACCTGAACAGAGAAGAA 92
Query 61 ACGGTGGAGAAGAACAATGAAGAAGAGTCATCAGTTGAAGACGAAGAGCAAGTCACGAGT 120
|| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 93 ACAGTGGAGAAGAACAATGAAGAAGAGTCATCAGTGGAAGACGAAGACCAAATCACGA-- 150
Query 121 AGTAACAACGTTAGACAGTATGTTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGAT 180
| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 151 A-T---AACGTTAGACAGTATATTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGAT 206
Query 181 CTTCATCTCTCCTTCGTTCGTGCAGTCCAACGACTAGGCGGTCCAGACAGAGCGACGCCG 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 207 CTTCATCTCTCCTTCGTTCGTGCTGTCCAACGACTAGGCGGTCCAGACAGAGCGACGCCG 266
Query 241 AAATTGGTTCTTGAGATGATGAATCTGAAAGGATTGAGTATTGCACATGTCAAGAGTCAT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 267 AAATTGGTTCTTGAGATGATGAATCTAAAAGGATTGAGTATTGCACATGTCAAGAGTCAT 326
Query 301 TTACAGATGTATCGAAGTAAGAAGCTCGAGCCATCATCTCGCCATGGATTTGGAGCTTTC 360
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 327 TTACAGATGTATCGAAGTAAGAAGCTCGAGCCGTCTTCTCGCCCTGGATTTGGAGCTTTC 386
Query 361 ATGAGTGGACAAAGAAGCTATTTGATTGACATGATCGACTCTCGATGTATCCCTTATGGC 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 387 ATGAGTGGACAAAGAAGCTATTTGATGGACATGATCGACTCTCGATGTATCCCTCATAGC 446
Query 421 GATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCG 506
Query 481 GTCATTACAAATCTTGGAGGTAACTTTCTTACGCGACCTTCGAGCTGGTTTAGCGGGTTA 540
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 507 GTCGTTACAAATCTTGGAGGTAACTTTCTTATGCGACCTTCGAGCTGGTTTAGCGGGTTA 566
Query 541 TGCAGAAATGATCAAGATAGCACAGAGAACAAGACTCTGCCTCTGCTCGAGATTAGGAAG 600
||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 567 TGCAGAAATGACCGAGACAGCACAGAGAACAAGACTCTGCCTCTACTCGAGATTAGGAAG 626
Query 601 ACGATCAATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCA 660
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AAGAACAATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCA 686
Query 661 ATGTCTGGAGGTGGGATACAGTTACCTGAGTTTGGAAATTGCAGGCAAAAACCAACAGAT 720
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 687 ATGTCCGGAGGTGGGATACAGTTGCCTGAGTTTGGAAATTGCAGGCAAAAACCAACAGAT 746
Query 721 GATATCAACACAATGCTCTCGCTCTCTCTGTTCTCGACATCATCAGGAGACCGTAAC 777
|||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 747 GATATCAACACAATGCTCTCGCTCTCTCTGTTGTCGACATCATCAG-A-ACCGTAAC 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5