BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321961

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42820.1 | Symbols: HVA22F | HVA22-like protein F | chr2:178...   793    0.0  


> AT2G42820.1 | Symbols: HVA22F | HVA22-like protein F | chr2:17817338-17818545 
REVERSE LENGTH=843
Length=843

 Score =  793 bits (429),  Expect = 0.0
 Identities = 461/477 (97%), Gaps = 0/477 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTGTCATTATTGTGATTGCAAAACGTTTTGATGCTCTAATTGGGCCTGGAGTCATG  60
            |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  245  ATGGGTTTCATTATTGCGATTGCAAAACGTTTTGATGCTCTAGTTGGGCCTGGAGTCATG  304

Query  61   CTTCTTTATCCTCTGTATGCATCATTTCGAGCAATAGAGAGTCCAACGATGTTAGATGAT  120
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  305  CTTCTCTATCCTCTGTATGCATCATTTCGAGCAATAGAGAGTCCAACAATGTTAGATGAT  364

Query  121  CAACAATGGCTTACATATTGGATCATTTACTCCTTAATAACGATATTTGAGCTATCCGTT  180
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  365  CAACAATGGCTTACATATTGGATCATTTACTCTTTAATAACGATATTCGAGCTATCCGTT  424

Query  181  TGGAGAGTCCTTGCCTGGCTACCATTTTGGCCATACTTGAAGCTTTTGTTCTGTATGTGG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  TGGAGAGTCCTTGCCTGGCTACCATTTTGGCCATACTTGAAGCTTTTGTTCTGTATGTGG  484

Query  241  TTGGTGCTACCAATGTTTAGTGGTGCAGCCTACATTTACTCCAATTTTGTGAGACAATAC  300
            ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  485  TTGGTGCTACCAATGTTCAGTGGTGCAGCTTACATTTACTCCAATTTTGTTAGACAATAC  544

Query  301  GTCAAAATTGGGATGAATGTTGGAGGAGGAACGAATTATACAGATGAACAGAGAAGAGTT  360
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  545  GTCAAAATTGGGATGAATGTTGGAGGAGGAACGAATTATACAGACGAACAAAGAAGAGTT  604

Query  361  TTACAGATGATGAGTCTTGATGCTAGAAAATCGGTTCAAGATTATGTCGACCGGTTTGGA  420
            ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct  605  TTACAGATGATGAGTCTTGATGCTAGAAAATCGGTTCAAGACTACGTTGACCGGTTTGGA  664

Query  421  TGGGATTCTGTTGAGAAAGCAATCAAAGCGGCTGAAAGAGAAACTAGAAAGCATTGA  477
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  665  TGGGATTCTGTTGAGAAAGCAATCAAAGCGGCTGAAAAAGAAACTAGAAAGCATTGA  721



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5