BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321962
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42830.2 | Symbols: SHP2, AGL5 | K-box region and MADS-box t... 1269 0.0
AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcr... 388 3e-107
AT2G42835.1 | Symbols: | other RNA | chr2:17823265-17824842 RE... 298 5e-80
> AT2G42830.2 | Symbols: SHP2, AGL5 | K-box region and MADS-box
transcription factor family protein | chr2:17820255-17824013
FORWARD LENGTH=1141
Length=1141
Score = 1269 bits (687), Expect = 0.0
Identities = 727/747 (97%), Gaps = 0/747 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGGTGGTGCGAGTAATGAAGTAGCagagagcagcaagaagataggaagagggaag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 188 ATGGAGGGTGGTGCGAGTAATGAAGTAGCAGAGAGCAGCAAGAAGATAGGGAGAGGGAAG 247
Query 61 atagagataaagaggatagagaaCACTACGAATCGTCAAGTCACTTTCTGCAAACGACGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGC 307
Query 121 AATGGTTTGCTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGATGCTGAGGTTGCTCTT 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 308 AATGGTTTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCTCTT 367
Query 181 GTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACA 427
Query 241 ATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCGTCACCGAAGCT 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 428 ATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAAGCT 487
Query 301 AATACTCAGTACTATCAGCAAGAGGCGTCTAAACTTCGGAGACAGATTCGGGACATTCAG 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 488 AATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATTCAG 547
Query 361 AATTTGAACAGACATATTCTGGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAG 420
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 548 AATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAG 607
Query 421 AACCTTGAAAGTAGGCTTGAGAAAGGAATCGGCCGTGTCCGCTCAAAGAAGCACGAGATG 480
|||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct 608 AACCTTGAAAGTAGGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGAGATG 667
Query 481 TTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAATCGAGCTGCAAAACGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAATCGAGCTGCAAAACGAT 727
Query 541 AACATGTATCTCCGCTCCAAGATTACTGAAAGATCAGGTCTACAGCAGCAAGAATCGAGT 600
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 728 AACATGTATCTCCGCTCCAAGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGT 787
Query 601 GTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCAGAGCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 788 GTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAG 847
Query 661 TACAACCGGAATTATATTCCGGTTAACCTGCTTGAACCAAATCAGAATGCCTCCAACCAA 720
|| ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||
Sbjct 848 TATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAA 907
Query 721 GACCAACCACCTCTGCAACTTGTTTGA 747
|||||||||||||||||||||||||||
Sbjct 908 GACCAACCACCTCTGCAACTTGTTTGA 934
> AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcription
factor family protein | chr3:21738460-21742517 FORWARD
LENGTH=1894
Length=1894
Score = 388 bits (210), Expect = 3e-107
Identities = 431/533 (81%), Gaps = 34/533 (6%)
Strand=Plus/Plus
Query 228 TGTGAGAGGAACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGAC 287
|||||| || ||||| |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 624 TGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTC 683
Query 288 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTTCGGAGACAGAT 347
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||
Sbjct 684 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGAT 743
Query 348 TCGGGACATTCAGAATTTGAACAGACATATTCT-GGGTGAATCTCTTGGTTCCTTGAACT 406
||| || |||||||||| || || |||||| | ||| ||||| ||||||||||||||||
Sbjct 744 TCGAGATATTCAGAATTCAAATAGGCATATTGTTGGG-GAATCACTTGGTTCCTTGAACT 802
Query 407 TTAAGGAACTCAAGAACCTTGAAAGTAGG-CTTGAGAAAGGAATCGGCCGTGTCCGCTC- 464
| ||||||||||| ||||| ||| | | | ||||| ||||||||| |||||||||||||
Sbjct 803 TCAAGGAACTCAAAAACCTAGAAGG-ACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCC 861
Query 465 AAAGAAGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAAT 524
||| ||| | ||| ||||||| |||||||| || || ||||| || |||| ||| |
Sbjct 862 AAA-AAGAATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGG-AAATG---- 915
Query 525 CGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAGATTA-CTGAAAGATC-AGGTCT- 581
||| ||||| || |||||||||| || || | ||||| | | ||| | | || | |
Sbjct 916 -GAGTTGCAACACAATAACATGTACCTGCGAGCAAAGAT-AGCCGAAGGCGCCAGAT-TG 972
Query 582 A--CAG--C-AGCAAGAATCGAGTGTGATACATCAAGG--GACAGTTTACGAGTCGGGTG 634
| | | | |||| ||||||||||||||||| | || |||||||||||| || ||||
Sbjct 973 AATCCGGACCAGCAGGAATCGAGTGTGATACA--AGGGACGACAGTTTACGAATCCGGTG 1030
Query 635 T-TACTTCTTC-TCACCAGTCAG-AGCAGTACAACCGGAATTATATTCCGGTTAACCTGC 691
| | ||||| | | ||||||| | |||| || || ||||| ||||||||||| ||||| |
Sbjct 1031 TAT-CTTCT-CATGACCAGTC-GCAGCATTATAATCGGAACTATATTCCGGTGAACCTTC 1087
Query 692 TTGAACCAAATCAG-AATGCCTCCAACCAAGACCAACCACCTCTGCAACTTGT 743
||||||| |||||| ||| | ||| |||||||||||| ||||| ||||||||
Sbjct 1088 TTGAACCGAATCAGCAATTC-TCCGGCCAAGACCAACCTCCTCTTCAACTTGT 1139
> AT2G42835.1 | Symbols: | other RNA | chr2:17823265-17824842
REVERSE LENGTH=1020
Length=1020
Score = 298 bits (161), Expect = 5e-80
Identities = 179/188 (95%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 560 AGATTACTGAAAGATCAGGTCTACAGCAGCAAGAATCGAGTGTGATACATCAAGGGACAG 619
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 666 AGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGTGTGATACATCAAGGGACAG 607
Query 620 TTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCAGAGCAGTACAACCGGAATTATATTC 679
|||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 606 TTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAGTATAACCGGAATTATATTG 547
Query 680 CGGTTAACCTGCTTGAACCAAATCAGAATGCCTCCAACCAAGACCAACCACCTCTGCAAC 739
|||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 546 CGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAAGACCAACCACCTCTGCAAC 487
Query 740 TTGTTTGA 747
||||||||
Sbjct 486 TTGTTTGA 479
Score = 95.3 bits (51), Expect = 7e-19
Identities = 54/55 (98%), Gaps = 1/55 (2%)
Strand=Plus/Minus
Query 470 AGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAG-AAA 523
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 950 AGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGTAAA 896
Score = 78.7 bits (42), Expect = 7e-14
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Minus
Query 520 GAAATCGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAG 561
||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GAAATCGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAG 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5