BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322000
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43235.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1203 0.0
AT2G43240.1 | Symbols: | Nucleotide-sugar transporter family p... 749 0.0
AT3G59360.1 | Symbols: UTR6, ATUTR6 | UDP-galactose transporter... 540 3e-152
> AT2G43235.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to
41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr2:17968698-17970835 REVERSE
LENGTH=1539
Length=1539
Score = 1203 bits (651), Expect = 0.0
Identities = 727/764 (95%), Gaps = 4/764 (1%)
Strand=Plus/Plus
Query 1350 GAAACATGACACAATGAACATGACTTCGTGttcttcttcatcttcttcttctttcCCACG 1409
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACATTACACAATGAACATGACTTCGTGTTCTTCTTCATCTTCTTCTTCTTTCCCACG 60
Query 1410 ACTCTTCGCCGCCAAATCCCAAATCTATAAAGCACCTCTTGTGTCCTTCTCCACTCCAAA 1469
||||||||||||||||||||||||||||||||| || || | |||||||||||||| ||
Sbjct 61 ACTCTTCGCCGCCAAATCCCAAATCTATAAAGCTCCAGTTTTATCCTTCTCCACTCCTAA 120
Query 1470 ACGCCGTCGTCCTCGTCCTCGCCGGAACCGGAAATCTAATGGCTCATCCTACGACCACAG 1529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGCCGTCGTCCTCGTCCTCGCCGGAACCGGAAATCTAATGGCTCATCCTACGACCACAC 180
Query 1530 CGACGGCAATCTTCTTTCAATCTCCACTTCCTCTCCCGCCGGAGCTGACGACCAAAGTCT 1589
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 181 CGACGGCAATCTTCTTTCTATCTCCACTTCCTCTCCCTCCGGAGCCGACGACCAAAGTCT 240
Query 1590 CAGCTTAACCCTAGACGTTCACCGGATTTCAACTCTAGCTAA-TACCCGTTTCCAATTGT 1648
|||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 241 CAGCTTAACCCTAGACGTTCACCGTATTTCAACTCTAGCTAATTA-CCGCTTCCAATTGT 299
Query 1649 TTCTCGATTCCGGCAAAGACGCGTTCTCCGACTTGCAAACACTAATCGCGCTCGATGATA 1708
||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 300 TTCTCGATTCCAGCAAAGACGCGTTCTCCGACTTGCAAACACTAATCTCACTCGACGATA 359
Query 1709 ACCGCAGAGTCGTTGTCTCATGCAAAAAATCAACTATGCAATTCGTCGGCGGTGTGGTTA 1768
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACCGGAGAGTCGTTGTCTCGTGCAAAAAATCAACTATGCAATTCGTCGGCGGTGTGGTTA 419
Query 1769 TACTTGGGTTCGTATTTGGTATTGCAATTAGGGTTCTTGTGAAATTAGGATCAGCTTTAA 1828
|||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 420 TACTAGGATTCGTATTTGGTTTTGCAATTAGGGTTCTTGTGAAATTAGGATCAGCTTTAA 479
Query 1829 AGGGTAATTTCCAAAGTAATCCCAAATTTGTAGTTAGGAGAGATAGGAGTCTTGGTGGGA 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGGTAATTTCCAAAGTAATCCCAAATTTGTAGTTAGGAGAGATAGGAGTCTTGGTGGGA 539
Query 1889 AGGAAGTGGTCGTCTCTGTTGATAACATTCGTTCATCTTCAAGAGATTCCAAGAGCT-CT 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 AGGAAGTGGTCGTCTCTGTTGATAACATTCGTTCATCTTCAAGAGATTCCAAGAGCTTC- 598
Query 1948 ATAGCCTCTGATCAAGTTTCTCGAAGTAACTCTATACCCAGAAATCTTCACCTGAAAGCT 2007
||||| |||||||||| ||||||||||||||||| || |||||||| ||||| ||||||
Sbjct 599 ATAGCTTCTGATCAAGCTTCTCGAAGTAACTCTACGCCTAGAAATCTCCACCTTAAAGCT 658
Query 2008 CAGAATAATTTGCCGAAATGGTGGCCGACTTCATTGCCTAGCCAGAACTTTGATGTGGTG 2067
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 659 CAGAATAATTTGCCGAAATGGTGGCCGACTTCATTGACTAGCCAGAGCTTTGATGTGGTC 718
Query 2068 GACAAAGAAGACTATCAGAGAGAAGCCAACAGAATCGTTCGAGC 2111
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct 719 GACAAAGAAGACTATCAGAGGGAAGCCAACAGAATCGTTCGAGC 762
Score = 287 bits (155), Expect = 4e-76
Identities = 161/164 (98%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 2108 GAGCTCCGTGGGAGTCTTCTTCTGTTGAGATTTGTAGTGAAGATGCCAGAGAGTTCATTG 2167
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 927 GAGCTCCGTGGGAGTCTTCTTCTGTTGAGATTTGTAGTGAAGATGCCCGAGAGTTCATTG 986
Query 2168 CTGGGCTCGCTGAGAACATTGGACTTGCAAAGATAGATGCTGCAAGAATGGTTTCTGCAG 2227
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 987 CTGGGCTCGCTGAGAACATTGGACTTGCAAAGATAGATGCTGCTAGAATGGTTTCTGCAG 1046
Query 2228 CAGTTGCTGCACGCACACGTTCATGGTTTCTACAAGCTTGGGCT 2271
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1047 CAGTTGCAGCACGCACACGTTCATGGTTTCTACAAGCTTGGGCT 1090
Score = 267 bits (144), Expect = 5e-70
Identities = 146/147 (99%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 2269 GCTGAGATGGAAATGGTTGCAAGAGGGTTGGAGAAACTCATGAAGCTTGAAGAGCGACAG 2328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GCTGAGATGGAAATGGTTGCAAGAGGGTTGGAGAAACTCATGAAGCTTGAAGAGCGACAG 1240
Query 2329 TCTCTACTGAAAACGTTTGTTGGAATGTGTTCCAGTGAAGATAGTCAAAGAAGCGCAGCT 2388
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1241 TCTCTACTGAAAACGTTTGTTGGAATGTGTTGCAGTGAAGATAGTCAAAGAAGCGCAGCT 1300
Query 2389 GAGGCTCTGGGTTTGGTGCACTGGTAA 2415
|||||||||||||||||||||||||||
Sbjct 1301 GAGGCTCTGGGTTTGGTGCACTGGTAA 1327
> AT2G43240.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr2:17970859-17975867 REVERSE LENGTH=1847
Length=1847
Score = 749 bits (405), Expect = 0.0
Identities = 429/441 (97%), Gaps = 0/441 (0%)
Strand=Plus/Plus
Query 898 CAGAACTTATTCCTCTATGGTTATGGTGCGATATTCAACTTCCTTGGAATACTTGGAACT 957
||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1017 CAGAACTTATTTCTTTATGGTTATGGTGCGATATTCAACTTCCTCGGAATACTAGGAACT 1076
Query 958 GTTATATATAAAGGTCCTGGCAGTTTTGACATCCTACAAGGACATTCTAGGGCTACTGTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 GTTATATATAAAGGTCCTGGCAGTTTTGACATCCTACAAGGACATTCTAGGGCTACTATG 1136
Query 1018 TTCCTGATACTGAACAACGCAGCACAAGGGATTCTATCCTCCTTTTTCTTCAAATATGCA 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TTTCTGATACTGAACAACGCAGCACAAGGGATTCTATCCTCCTTTTTCTTCAAATATGCA 1196
Query 1078 GATACAATCTTGAAGAAATATTCGTCCACAGTAGCCACAATATTTACTGGAATAGCATCT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1197 GATACAATCTTGAAGAAATATTCGTCCACAGTAGCCACAATATTTACTGGCATAGCATCT 1256
Query 1138 GCAGCACTCTTTGGACATATATTAACCATGAATTTTCTTCTGGGAATTTCTATAGTTTTC 1197
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1257 GCAGCACTCTTTGGACATATATTAACAATGAATTTTCTTCTGGGAATTTCTATAGTTTTC 1316
Query 1198 ATTTCAATGCATCAGTTCTTTTCACCCCTTTCAAAAGCAAAAGACGAGCAACAAAACGGA 1257
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1317 ATTTCAATGCATCAGTTCTTTTCACCCCTTTCAAAAGCAAAAGACGAACAACAAAACGGA 1376
Query 1258 AACCTAGAGTTAGTTGACGGAAAGGATGGCCATAGGGCTAAAGACTCATTCATCAACATG 1317
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AACATAGAGTTAGTTGACGCAAAGGATGGCCATAGGGCTAAAGACTCATTCATCAACATG 1436
Query 1318 GCAGCAGGAGCAAATGAAGAG 1338
||||||||||||| |||||||
Sbjct 1437 GCAGCAGGAGCAACTGAAGAG 1457
Score = 726 bits (393), Expect = 0.0
Identities = 407/414 (98%), Gaps = 0/414 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAGTGCAGCGTATGTCGTTCAAGGTTGGTTTCTCCCAGTAGCAAAGCTATTTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGGCTGAGTGCAGCGTATGTCGTTCAAGGTTGGTTTCTCCCAGTAGCAAAGCTATTTCA 359
Query 61 AGGGCTTATGACAACTACAACTACAAGATTAGAGTATCCTCAAAACAACGAGCTCTCAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGGCTTATGACAACTACAACTACAAGATTAGAGTATCCTCAAAACAACGAGCTCTCAAT 419
Query 121 GTCTTTTTGGTAGTTGGTGACTGCATGCTAGTTGGTCTACAGCCCGTCTTAGTGTACATG 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTCTTTTTGGTAGTCGGTGACTGCATGCTAGTTGGTCTACAGCCCGTCTTAGTGTACATG 479
Query 181 TCTAAAGTGGATGGAAAGTTCAACTTTAGTCCTATTAGCGTCAACTTCTTGACAGAAATT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTAAAGTGGATGGAAAGTTCAACTTTAGTCCTATTAGCGTCAACTTCTTGACAGAAATC 539
Query 241 GCAAAAGTTATTTTTGCGATTGTCATGCTATTATTCCAGGCCAGGCACCAAAAAGTTGGA 300
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCGAAAGTTATTTTCGCGATGGTCATGCTATTATTCCAGGCCAGGCACCAAAAAGTTGGA 599
Query 301 GAGAAACCTCTACTATCTCTTTCCACGTTTGTCCAGGCAGCTCGGAACAATGTGCTTCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 GAGAAACCTCTACTATCTCTTTCCACGTTTGTCCAGGCAGCTCGGAACAATATGCTTCTC 659
Query 361 GCTGTACCAGCAGGGTTGTATGCCATTAATAACTATCTTAAGTTCACAATGCAG 414
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTGTTCCAGCAGGGTTGTATGCCATTAATAACTATCTTAAGTTCACAATGCAG 713
Score = 189 bits (102), Expect = 1e-46
Identities = 106/108 (98%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 446 CAGCTATATTTCAATCCTGCTACTGTGAAGATGCTCAGTAATCTAAAAGTTCTGGTGATT 505
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 711 CAGCTATATTTCAATCCTGCTACTGTGAAGATGCTCAGCAATCTAAAAGTTCTGGTGATT 770
Query 506 GCTGTACTACTGAAGATGATAATGAAGCGACGGTTTTCCATCATACAG 553
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 771 GCTGTACTACTGAAGATGATAATGAAGCGTCGGTTTTCCATCATACAG 818
Score = 158 bits (85), Expect = 3e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 552 AGGGATTAGTATAAATCAGCTGCGTTCTCTTCCTGAAGGTGCTACAACTATGGCCGTTCC 611
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 845 AGGGATTAGTATAAATCAGCTGCGTTCTCTTCCTGAAGGAGCTACAACTGTGGCTGTTCC 904
Query 612 AATTGCTACGGGTGCATACATCTGTACCTTTATCTTT 648
||||||||||||||||||||| |||||||||||||||
Sbjct 905 AATTGCTACGGGTGCATACATATGTACCTTTATCTTT 941
> AT3G59360.1 | Symbols: UTR6, ATUTR6 | UDP-galactose transporter
6 | chr3:21935283-21940244 REVERSE LENGTH=1902
Length=1902
Score = 540 bits (292), Expect = 3e-152
Identities = 396/446 (89%), Gaps = 7/446 (2%)
Strand=Plus/Plus
Query 898 CAGAACTTATTCCTCTATGGTTATGGTGCGATATTCAACTTCCTTGGAATACTTGGAACT 957
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1052 CAGAATTTATTCCTCTATGGTTATGGTGCAATATTCAACTTTCTTGGAATACTAGGAACT 1111
Query 958 GTTATATATAAAGGTCCTGGCAGTTTTGACATCCTACAAGGACATTCTAGGGCTACTGTG 1017
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1112 GTTATATATAAAGGTCCTGGCAGCTTTGACATCCTACAAGGACATTCTAGGGCTACCATG 1171
Query 1018 TTCCTGATACTGAACAACGCAGCACAAGGGATTCTATCCTCCTTTTTCTTCAAATATGCA 1077
|| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1172 TTTTTGATACTGAACAACGCAGCACAAGGGATTTTATCGTCCTTTTTCTTCAAATATGCA 1231
Query 1078 GATACAATCTTGAAGAAATATTCGTCCACAGTAGCCACAATATTTACTGGAATAGCATCT 1137
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 1232 GATACAATCTTGAAGAAATATTCATCGACAGTTGCCACAATATTTACTGGCATAGCATCT 1291
Query 1138 GCAGCACTCTTTGGACATAT-ATTAACCATGAATTTTCTTCTGGGAATTTCTATAGTTTT 1196
|| || |||||||||||| | || ||||||||| || ||||| ||||||||||| |||||
Sbjct 1292 GCTGCGCTCTTTGGACATGTTAT-AACCATGAACTTCCTTCTCGGAATTTCTATCGTTTT 1350
Query 1197 CATTTCAATGCATCAGTTCTTTTCACCCCTTTCAAAAGCAAAAGACGAGCAACAA-A-AC 1254
|||||| ||||| |||||||||||||| ||| | ||||| | ||||||||||||| | |
Sbjct 1351 CATTTCGATGCACCAGTTCTTTTCACCACTTGCCAAAGCGAGAGACGAGCAACAACAGAA 1410
Query 1255 -GGAAACCTAGAGTTAGTTGACGGAAAGGATGGC-CATAGGGCTAAAGACTCATTCATCA 1312
|| |||||||| ||| || ||||||| | || |||||||| || ||||||||||
Sbjct 1411 TGGGAACCTAGAACTAGGCAACACAAAGGATA-CTCACAGGGCTAATGAATCATTCATCA 1469
Query 1313 ACATGGCAGCAGGAGCAAATGAAGAG 1338
||||||| ||||||||||||||||||
Sbjct 1470 ACATGGCCGCAGGAGCAAATGAAGAG 1495
Score = 444 bits (240), Expect = 2e-123
Identities = 359/415 (87%), Gaps = 14/415 (3%)
Strand=Plus/Plus
Query 4 GCTGAGTGCAGC-GTATGTCGTTCAAGGTTGGTTTCTCCCAGTAGCAAAGCTATTTCAAG 62
||||||||| | | ||||| ||||| ||||| ||||| |||||||| ||||||| ||
Sbjct 344 GCTGAGTGC-CCTGCATGTCATTCAAAATTGGTCTCTCCTGGTAGCAAAACTATTTCTAG 402
Query 63 GGCTTATGACAACTACAACTACAAGATTAGAGTATCCTCAAAACAACGAGCT-CTCAATG 121
|||||||| || || | |||||||||| ||||||||||||||||| | | |||||||
Sbjct 403 GGCTTATG---ACGAC--C-ACAAGATTAGGGTATCCTCAAAACAACGTG-TCCTCAATG 455
Query 122 TCTTTTTGGTAGTTGGTGACTGCATGCTAGTTGGTCTACAGCCCGTCTTAGTGTACATGT 181
|| ||||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 456 TCCTTTTGGTTGTAGGTGATTGCATGCTTGTTGGTCTCCAGCCTGTCTTGGTGTATATGT 515
Query 182 CTAAAGTGGAT-GGAAAGTTCAACTTTAGTCCTATTAGCGTCAACTTCTTGACAGAAATT 240
| || |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 516 CGAAGGTGGATGGGAAA-TTCAACTTCAGTCCTATTAGCGTCAACTTCTTGACAGAAATC 574
Query 241 GCAAAAGTTATTTTTGCGATTGTCATGCTATTATTCCAGGCCAGGCACCAAAAAGTTGGA 300
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 575 GCAAAAGTTATTTTTGCGATTGTGATGCTTTTAATCCAGGCCAGGCACCAAAAAGTTGGA 634
Query 301 GAGAAACCTCTACTATCTC-TTTCCACGTTTGTCCAGGCAGCTCGGAACAATGTGCTTCT 359
||||| ||||| ||||| | ||||||| |||||||||||||| || || |||||||||||
Sbjct 635 GAGAAGCCTCTTCTATC-CGTTTCCACATTTGTCCAGGCAGCCCGAAATAATGTGCTTCT 693
Query 360 CGCTGTACCAGCAGGGTTGTATGCCATTAATAACTATCTTAAGTTCACAATGCAG 414
||||| ||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 694 TGCTGTTCCAGCCCTGTTGTATGCAATTAATAACTATCTGAAGTTCACAATGCAG 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119929102005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5