BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322004
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43270.1 | Symbols: | F-box and associated interaction doma... 501 6e-141
> AT2G43270.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17988207-17989491 REVERSE LENGTH=1164
Length=1164
Score = 501 bits (271), Expect = 6e-141
Identities = 471/564 (84%), Gaps = 27/564 (5%)
Strand=Plus/Plus
Query 7 TACCTAGTTACCGATTTACTGGAAGAAATCTTACTTGGACTGCCGTTGAAATCAGTCTTC 66
||| ||||| ||||| |||| |||||||| || |||||| |||| || |||||| || ||
Sbjct 7 TACGTAGTTCCCGATCTACTTGAAGAAATTTTCCTTGGATTGCCTTTAAAATCAATCCTC 66
Query 67 AGATTCAAAACAGTCTCAAAGCAATGGAGATCAATCCTGGAGTCGAGGAGGTTCGTGGAT 126
||||||||||| |||||||| |||||||||||||||||||| |||| ||| |||| |||
Sbjct 67 AGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGAGTTTCGCGGAG 126
Query 127 ATGCGTTTGAAGAAAGTTCAGAAGAAGCTGAAAATCCTAGCTGTGGGAGAAGGCCGGACC 186
| |||||| ||| ||| |||||||| |||||| || ||||| |||| | ||||||
Sbjct 127 AGGCGTTT---GAACGTTGAGAAGAAGGAGAAAATTCTGGCTGTTGGAG-A--CCGGACT 180
Query 187 AAGTCGGGATTCGAAGGTGACGAAGAGATCGAGATGATCTATTTACATTGCG--A-TGAC 243
||| ||||||||||||||| ||||||||| ||||| |||||||||| |||| | ||||
Sbjct 181 GAGTTGGGATTCGAAGGTGAGGAAGAGATCCAGATGGTCTATTTACACTGCGATATTGAC 240
Query 244 GCCACACAACCCTCGCTGACAT-TCGACGGTTTGGTCTGCATCCCAAAACCAGGTTGGAT 302
||||||| |||||| ||||||| | || |||||||| || |||||| ||||||||||||
Sbjct 241 GCCACACGACCCTCTCTGACATGT-GAGGGTTTGGTGTGTATCCCAGCACCAGGTTGGAT 299
Query 303 CAACGTTTTGAACCCATCGACCAGACAACTCCGGCGATTCCCTTGTAGCCC-AGATCATC 361
|||||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||||
Sbjct 300 CAACGTTTTGAACCCATCGACCAGACAACTCCGGAGATTTCCTTGTAGCCCTA-ATCATC 358
Query 362 CCGTGTCTCCTTTTTGTCTTAATCGT---CAGCTAAGAGCCTGGCC-ATACCTCACTTTC 417
|||| | ||| | || || |||| ||| | |||| | | | ||||||||||| |
Sbjct 359 ACGTG-C-CCTCTGA-TCGTATTCGTTTTCAGTTCAGAGAC-GAACTATACCTCACTTCC 414
Query 418 TTCCCGGGAAATTGGGCA-ATGGGATTCGGTAGAGATAAAGTTAATGGTTGCTATAAAGT 476
|| ||||| ||||||| | |||||||| |||||||| ||| |||||||| ||||||||||
Sbjct 415 TTTCCGGGGAATTGGG-AGATGGGATTTGGTAGAGACAAATTTAATGGTAGCTATAAAGT 473
Query 477 GGTGAGGATGTGTTTT-GATCCTGTGGAAGAATGTGAGGTTCTTGATCTTGAAACAGGTG 535
|||||||||||||||| | |||||||||| |||| |||||||||||| ||||||| || |
Sbjct 474 GGTGAGGATGTGTTTTAG-TCCTGTGGAAAAATGCGAGGTTCTTGATGTTGAAACTGGGG 532
Query 536 AATGGAG-GAAACTGATTCCACCT 558
||||||| ||| |||| |||||||
Sbjct 533 AATGGAGTGAA-CTGAATCCACCT 555
Score = 484 bits (262), Expect = 6e-136
Identities = 427/502 (85%), Gaps = 30/502 (6%)
Strand=Plus/Plus
Query 652 CTAGCCTTGAATCTTCACACACTAGAGTTCCGA-TATGTTT-CGATTCCA-CATACGTGG 708
||||||||| ||||||||||||||||||||| | |||||| || ||||| | ||||| |
Sbjct 598 CTAGCCTTGGATCTTCACACACTAGAGTTCC-ACAATGTTTCCG-TTCCATC-TACGT-G 653
Query 709 TT-CACCCTTGA-TACCCAGATAATGAACCTTGAGGACCGTCTAGCCATAGCCAAAACCA 766
|| || || ||| | ||||||| |||||||||| ||||||||||||||| | ||||| |
Sbjct 654 TTGCA-CCATGAGTGCCCAGATGGTGAACCTTGATGACCGTCTAGCCATAACTAAAACAA 712
Query 767 ATGGTGGGCCTGAATGGGAACTAGAAATACTGAGCATGATGGAT-TCAGA-AGAAGAATT 824
| |||| ||| |||||||| ||||| ||||||||| |||||||| | ||| | ||||| |
Sbjct 713 ACGGTGCGCCAGAATGGGAGCTAGAGATACTGAGCCTGATGGATGT-AGACA-AAGAAAT 770
Query 825 ATGGACCAAGACTTACTCCATAACTTTAGCCAGTATCATTATTGGCCTCCCATGGGAG-C 883
||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 771 ATGGAGCAAGACTTACTCCATAACTTTAGCCAGTATCATTATTAACCACCCATGGGAGTC 830
Query 884 ATAGTTGGTTCACGGTGGTGACTGTTTCAAAGTTAGGGAATCTTGTCTTGTATGACAAAC 943
|||||||||||||||| |||| ||||| ||| |||||||||||||||| | |||||| |
Sbjct 831 -TAGTTGGTTCACGGTGTTGACGGTTTCTAAGCTAGGGAATCTTGTCTTTTGTGACAATC 889
Query 944 ACAAGAGGCTGTTCAAATATAATACAAAGACAAATGAGATTTGCTGTCTCTCCTCAAATA 1003
||||| || |||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 890 ACAAGCGGTTGTTTAAATATAATACCGAGACAAATGAGATTTGCTGTCTCTCCTCAGATA 949
Query 1004 TTTCTGTTATATCTCTTTGCCTCGAGAATTTGGCACCACTTCGATCGGACTCAGGACATC 1063
||||||||||||||| || |||||| |||||| ||||||||| | |||||||||||||
Sbjct 950 TTTCTGTTATATCTCCTTATCTCGAGGATTTGGTACCACTTCGTTTGGACTCAGGACAT- 1008
Query 1064 ATCCGGATCCGGATCCGGAGGATTATAAAATCAGGATATCTAGTTGCGGATTGTGTTT-G 1122
| ||| ||| || | |||| |||||||||| ||||||||||||||||| ||| |
Sbjct 1009 ----G-ATC---ATC-GG-G-ATTACAAAATCAGGACATCTAGTTGCGGATTGT-TTTCG 1056
Query 1123 AAGCATCCGGAGGCCGGGATAT 1144
|||||||||||||| ||| |||
Sbjct 1057 AAGCATCCGGAGGCAGGGTTAT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5