BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322009
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43330.1 | Symbols: ATINT1, INT1 | inositol transporter 1 | ... 2145 0.0
> AT2G43330.1 | Symbols: ATINT1, INT1 | inositol transporter 1
| chr2:18000854-18004083 FORWARD LENGTH=2040
Length=2040
Score = 2145 bits (1161), Expect = 0.0
Identities = 1263/1313 (96%), Gaps = 4/1313 (0%)
Strand=Plus/Plus
Query 256 GAAACTATTGTAAGTATGGCTTTAGTTGGTGCGATGATTGGTGCTGCAGCAGGAGGTTGG 315
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 501 GAAACTATTGTAAGTATGGCTTTAGTTGGTGCCATGATTGGTGCTGCAGCTGGAGGTTGG 560
Query 316 ATCAATGACTACTACGGTCGTAAAAAGGCGACT-TTGTTTGCTGATGTTGTCTTTGCAGC 374
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 561 ATCAATGACTACTACGGTCGTAAAAAGGCGACTCTT-TTTGCAGATGTTGTCTTTGCAGC 619
Query 375 TGGAGCAATCGTTATGGCTGCTGCTCCTGATCCGTATGTTTTGATATCGGGTCGTCTCTT 434
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TGGAGCTATCGTTATGGCTGCTGCTCCTGATCCGTATGTTTTGATATCGGGTCGTCTCTT 679
Query 435 GGTCGGTTTAGGAGTTGGTGTTGCTTCTGTGACTGCGCCGGTTTATATAGCGGAAGCATC 494
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 680 GGTCGGTTTAGGAGTTGGTGTTGCTTCTGTGACTGCTCCGGTTTATATAGCGGAAGCATC 739
Query 495 CCCATCAGAAGTGAGAGGTGGACTTGTGAGCACCAATGTATTGATGATCACCGGTGGACA 554
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 740 TCCATCGGAAGTTAGAGGTGGACTTGTGAGCACCAACGTATTGATGATCACTGGTGGACA 799
Query 555 GTTTCTTTCATACCTCGTTAATTCTGCTTTCACACAGGTTCCAGGAACATGGAGATGGAT 614
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GTTTCTTTCATATCTCGTTAATTCTGCTTTCACACAGGTTCCAGGAACATGGAGATGGAT 859
Query 615 GCTTGGTGTTTCAGGCGTTCCTGCTGTTATCCAATTCGTCCTAATGCTTTTCATGCCAGA 674
||||||||||||||||||||| ||||| || || ||| |||| |||||||||||||||||
Sbjct 860 GCTTGGTGTTTCAGGCGTTCCCGCTGTGATTCAGTTCATCCTCATGCTTTTCATGCCAGA 919
Query 675 ATCCCCTCGATGGCTTTTCATGAAGAATCGTAAAGCGGAAGCCATCCAAGTGCTCGCCAG 734
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 920 ATCCCCTCGATGGCTTTTCATGAAAAATCGTAAAGCGGAAGCCATCCAAGTGCTCGCCAG 979
Query 735 AACCTATGACATCTCGCGGTTGGAAGACGAGATCGATCATCTTTCAGCGGCTGAAGAGGA 794
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 980 AACCTATGACATCTCGCGGTTAGAAGACGAGATTGATCATCTTTCAGCGGCTGAAGAGGA 1039
Query 795 AGAAAAACAAAGGAAACGCACTGTTGGCTACTTGGATGTTTTCAGATCCAAAGAATTGAG 854
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGAAAAACAAAGGAAGCGCACTGTTGGCTACTTGGATGTTTTCAGATCCAAAGAATTGAG 1099
Query 855 ACTTGCATTT-TTGGCCGGAGCAGGACTTCAGGCGTTTCAGCAGTTCACTGGTATCAATA 913
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 ACTTGCATTTCTT-GCCGGAGCAGGACTTCAGGCGTTTCAGCAGTTCACTGGTATCAATA 1158
Query 914 CTGTTATGTACTACAGCCCTACGATAGTCCAAATGGCTGGATTTCACTCAAACCAGCTTG 973
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1159 CAGTTATGTACTACAGCCCTACGATAGTCCAAATGGCTGGATTTCACTCAAACCAGCTCG 1218
Query 974 CTCTATTCCTCTCTCTCATCGTTGCTGCCATGAACGCTGCTGGAACAGTCGTGGGGATTT 1033
|| | ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1219 CTTTGTTCCTGTCTCTCATTGTTGCTGCCATGAATGCTGCTGGAACAGTCGTGGGGATTT 1278
Query 1034 ACTTCATCGATCATTGTGGAAGGAAAAAGCTTGCTCTCTCAAGCTTATTCGGTGTCATTA 1093
||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 1279 ACTTCATCGATCATTGTGGAAGGAAAAAGCTAGCTCTCTCAAGTTTATTTGGCGTCATTA 1338
Query 1094 TATCTCTCCTAATCCTCTCAGTCTCGTTTTTCAAACAATCTGATACATCATCTGATGGAG 1153
|||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1339 TATCACTCTTAATCCTCTCAGTCTCGTTTTTCAAACAATCTGAGACATCATCTGATGGAG 1398
Query 1154 GGCTCTACGGTTGGCTCGCTGTGCTTGGCTTAGCTCTATACATTGCTTTCTTTGCACCGG 1213
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1399 GGCTCTATGGTTGGCTCGCTGTGCTTGGCTTAGCTCTATACATTGTTTTCTTTGCACCGG 1458
Query 1214 GAATGGGACCGGTCCCTTGGACGGTGAACTCAGAGATATACCCTCAACAGTACCGAGGCA 1273
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1459 GAATGGGACCAGTCCCATGGACGGTGAACTCAGAGATATACCCTCAACAATACCGAGGCA 1518
Query 1274 TATGCGGAGGCATGTCAGCTACAGTTAACTGGATCAGCAATTTGATTGTGGCACAAACAT 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 TATGCGGAGGCATGTCAGCTACAGTTAACTGGATCAGCAATTTGATTGTGGCACAAACAT 1578
Query 1334 TCTTGACAATCGCGGAAGCTGCTGGAACAGGAATGACTTTCTTGATTTTGGCGGGAATAG 1393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1579 TCTTGACAATCGCGGAAGCTGCTGGAACAGGAATGACTTTCTTGATTTTGGCGGGAATTG 1638
Query 1394 CGGTTCTTGCGGTAATCTTTGTGATTGTGTTTGTCCCTGAGACACAAGGGCTAACATTTT 1453
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1639 CGGTTCTTGCTGTAATCTTTGTGATTGTGTTTGTCCCTGAGACTCAAGGGCTAACGTTTT 1698
Query 1454 CGGAAGTTGAACAGATTTGGAAAGAAAGAGCTTATGGAAATATCAGCGGTTGGGGCAGTA 1513
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1699 CGGAAGTTGAACAGATTTGGAAAGAAAGAGCTTATGGAAATATCAGTGGCTGGGGCAGTA 1758
Query 1514 GCAGTGATAGCAACAACATGGAAGGGTTACTCGAGCAGGGATCTCAATCTTAA 1566
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 GCAGTGATAGCAACAACATGGAAGGGTTACTCGAGCAGGGATCTCAATCTTAA 1811
Score = 387 bits (209), Expect = 2e-106
Identities = 222/228 (97%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 1 ATGACATTGACGATCCCAAACGCACCTGGGAGCTCCGGGTACTTGGATATGTTCCCAGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 ATGACATTGACGATCCCAAACGCACCTGGGAGCTCCGGGTACTTGGATATGTTCCCAGAG 341
Query 61 AGAAGGATGTCGTATTTTGGGAATTCTTACATTCTGGGTTTGACTGTAACTGCCGGAATC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 342 AGAAGGATGTCGTATTTTGGGAATTCTTACATTCTGGGTTTGACTGTCACTGCCGGAATC 401
Query 121 GGTGGCCTTCTCTTTGGTTATGATACAGGTGTAATTTCCGGTGCCCTTTTGTACATTAAG 180
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GGTGGCCTTCTGTTCGGTTATGATACAGGTGTAATTTCCGGTGCCCTTTTGTACATTAAG 461
Query 181 GATGATTTCGAAGTTGTTAAACAGAGCAGTTTCTTACAGGTAAATTAT 228
|||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 462 GATGATTTCGAAGTTGTTAAGCAGAGCAGTTTCTTACAGG-AAACTAT 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5