BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322019
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43465.1 | Symbols: | RNA-binding ASCH domain protein | chr... 1040 0.0
> AT2G43465.1 | Symbols: | RNA-binding ASCH domain protein | chr2:18047533-18049763
REVERSE LENGTH=1420
Length=1420
Score = 1040 bits (563), Expect = 0.0
Identities = 614/639 (96%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 851 TTCACCAATATCCATTCTTTTACGAGCTGTTGAAAGGCGAGAGTTCAAAGAAAGTGTTTC 910
||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 584 TTCACCAATATGCATCCTTTTACGAGCTGTTGAAAGCCGAGAGTTCAGAGAAAGTGTTTC 643
Query 911 CTGGTACTAAAACAGTGGAAGAAGGTATGCAAATGTTTAGGAAGTTGTATGATATGGATC 970
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 644 CTGGCACTAAAACAGTGGAAGAAGGTATGCAAATGTTTAGGAAGTTATATGATACGGATC 703
Query 971 AAGAGAATTCCAATGGTGTTGTGGCAATCAATCTTAGTAAATCAGTTGTC-CAGCCTTGT 1029
||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 704 AAGAGAATTTCAATGGTGTTGTGGCAATCCATCTTAGTAAATCAGTTG-CTCAGCCTTGT 762
Query 1030 GTTGCTTTGGCTCACATACTGTCTGGCTTGAGTTACACTGGCGTTCAAAACCTTCTCGGT 1089
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 763 GTTGCTTTGGCTCACATACTGTCTGGCTTGAGTTACACTGGCGTGCAAAACCTTCTCGGT 822
Query 1090 CTATCTCACACAACCGGATCCATTTTTCATGCTCTGCCTCCTCCAAGATCGATGCTACTC 1149
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 823 CTATCTCACACAACTGGATCCATTTTTCATGCTCTGCCTCCTCCTAGATCGATGCTACTC 882
Query 1150 TCTTCATTCATGCTTCCATATAAGCCAAAGATAAAAGGTTGTAGATTGAGCCATGGAGCT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TCTTCATTCATGCTTCCATATAAGCCAAAGATAAAAGGTTGTAGATTGAGCCATGGAGCT 942
Query 1210 AGAGCATTAGCCAAGCATGTTGATCGAAGTAGTGATGGATTTTGGGGTGTTCTTCAAGGA 1269
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 943 AGAGCATTAGCCAAGCATGTTGATCGAAGTAGCGATGGATTTTGGGGTGTTCTTCAGGGA 1002
Query 1270 TCTGATTCAGATAAAAATAAGTGTGCGATGGACATTATCAATCGGTTCATTGGCCATTGT 1329
||||||||||||||||| || |||| |||||||| |||||||||||||||||| |||||
Sbjct 1003 ACTGATTCAGATAAAAATGAGCGTGCAATGGACATAATCAATCGGTTCATTGGCAATTGT 1062
Query 1330 TGTTGGATGAACGTACATATCGTTCCACCACACGGGGAAGTGTTCGAGATAAGAGTAGCT 1389
|||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1063 TGTTGGATGAACATACATATCGTTCCACCACATGGTGAAGTGTTCGAGATAAGAGTAGCT 1122
Query 1390 CAAGGCTATGGAGCACGTTGGTCTCGAGATGGAACCAAATTCATTGGATTTCTTGAGCCT 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 CAAGGCTATGGAGCACGTTGGTCTCGAGATGGAACCAAATTCATTGGATTTCTTGAGCCT 1182
Query 1450 TACATGGAGGATGGTCACTCCATGGCCTGGAAGCATTAA 1488
|||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TACATGGAGGATGGTCACTCCATGGCCTGGAAGCATTAA 1221
Score = 468 bits (253), Expect = 8e-131
Identities = 320/353 (91%), Gaps = 1/353 (0%)
Strand=Plus/Plus
Query 495 AAAACTGAGAGATTGTTTAGAGGAGATGGTGAAATTCACTCTAGATTGCCGTGTAGAATT 554
|||| | ||||||||| |||| || |||||||| ||||| || |||| | ||||||||||
Sbjct 61 AAAA-TTAGAGATTGTCTAGATGAAATGGTGAAGTTCACACTCGATTACTGTGTAGAATT 119
Query 555 CGATTTAGAGCTCACCGATGATTTCTGCTTTGGCCTTCTTTGCGGCGAATCAATTCTTCT 614
|||| ||| ||| |||| || ||||||| |||||||| |||||||||||| ||||||
Sbjct 120 CGATATAGGGCTTACCGGGGAGTTCTGCTCCGGCCTTCTGTGCGGCGAATCAGTTCTTCA 179
Query 615 CGACGGTGAACGAATCGAATCGTCTTCCCACGCTTTGCTACACCGATTTGGAGGTGTTCC 674
|||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 180 CGACGGTGAACGAATCGAATCGTCTTCCTACGCTTTGCTACACCGGTTTTCAGGTGTTCC 239
Query 675 TGATTATCCCTTGTACAAGCTTCTTGCTTTAGGTCTGCTGAAATCAATAGATTCTGGTTC 734
||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 240 TGATTATCCCTTGTACAAGGTTCTAGCTTTAGGTCTGCTGAAATCAATTGATTCTGGTTC 299
Query 735 TGTCTGTGGAACCTTTGAGAAGATTTCGTTGGGGAAGGAGGTAATCTGGTTGAAGGAGAG 794
| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 300 TTTCTGTGGAACCTTTGAGAAAATTTCGTTGGGGAAGGAAGTAATCCGGTTGAAGGAGAA 359
Query 795 AGAAGATGAGTGGAGCAAGCTGATAAATCAAAAGGGTTCTGAGTTAGTCAATG 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAAGATGAGTGGAGCAAGCTGATAAATCAAAAGGGTTCTGAGTTAGTCAATG 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5