BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322083
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA... 1219 0.0
AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-m... 1199 0.0
> AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA:protein
N-myristoyltransferase (NMT), putative, similar to
N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834;
contains Pfam profiles PF01233: Myristoyl-CoA:protein
N-myristoyltransferase N-terminal domain, PF02799: Myristoyl-CoA:protein
N-myristoyltransferase C-terminal domain; gene
contains a frameshift. This could be a pseudogene or a sequencing
error.; blastp match of 62% identity and 5.1e-121
P-value to GP|20804654|dbj|BAB92343.1||AP003273 putative N-myristoyl
transferase {Oryza sativa (japonica cultivar-group)}
| chr2:18265431-18267426 REVERSE LENGTH=1996
Length=1996
Score = 1219 bits (660), Expect = 0.0
Identities = 1005/1169 (86%), Gaps = 34/1169 (3%)
Strand=Plus/Plus
Query 101 ATTCAAAGACCCATAAGTTCTGGGAGACTCAA-CTGGTTGGGCAGTTCAAGGATAT-CGG 158
|||||||||||||||||||||||||||||||| || |||| |||||| || ||||| | |
Sbjct 698 ATTCAAAGACCCATAAGTTCTGGGAGACTCAACCT-GTTGAGCAGTTTAAAGATATCCAG 756
Query 159 AGACACGAGTTTGCCTGAAGGTCCAGTTGAGCCCGCAACTCCGTTATCTGAGGTCAAGCA 218
|||||||||||||||||||| ||| |||||||||||||| | | ||||||||||||||
Sbjct 757 -GACACGAGTTTGCCTGAAGGCCCAATTGAGCCCGCAACTTTGGTGTCTGAGGTCAAGCA 815
Query 219 AGAGCCATACAACCTTCCTT-CTC-CTTATGAATGGACCACATGCGATTTGAGCTCTGAT 276
|||||| ||||||||| ||| || || |||||||||| ||||||| ||| ||||||
Sbjct 816 AGAGCCGTACAACCTT-CTTGGTCAATT-CGAATGGACCATATGCGATATGAACTCTGAC 873
Query 277 GATATGTGTTCAGAGGTTTACAACTTTCTCAAGGTACATCA-TCCTGATGACGGATATTT 335
|||||||||| |||| | |||||||||||||||| | | || |||||||||| | |
Sbjct 874 GATATGTGTTTAGAGATGTACAACTTTCTCAAGG-AAAACAGTCCTGATGAC--A-A-CA 928
Query 336 GTTCGAGGA-AACTTATTCCAGGGAGTTTCTAAGGTGGGCATTGTGTCCACCTGGTTATT 394
| || || | | || |||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 929 GATCAAGTATGA-GTACTCCAAAGAGTATCTAAGGTGGGCACTGTGTCCACCTGGTTATT 987
Query 395 ACCAGAGCTGGCATATTGGAGTACGTGCCAAGACCTCGAAGAAACTCGTTGCTTTCATCA 454
|||||||||||||||||||||| || | ||||||||| ||||||||| |||||||||||
Sbjct 988 ACCAGAGCTGGCATATTGGAGTCCGCGTCAAGACCTCCAAGAAACTCATTGCTTTCATCT 1047
Query 455 GTGG-TGTGCCAGCAAGAATTAGGGTGCATGATGAGGTTGTTAAAATGGCAAAGATCAAT 513
|||| | |||| ||||||| ||||||| ||||||||||||||||||||| ||| |||||
Sbjct 1048 GTGGCAG-GCCAACAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGCGAAGGTCAAT 1106
Query 514 TTCTTGTGTGTTCACAAAAAGCTCAGGTCAAAGAGACTTGCTCCTGTCATGATCAAGGAG 573
| ||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 1107 TCCTTGTGTGTTCACAAGAAGCTCAGGTCTAAGGGACTTGCTCCTCTCATGATCAAGGAG 1166
Query 574 GTGACTAGAATGGTTCACTTGCAGAATATATGGCAAGCGGCTTATAGCTTACCTGATATA 633
||||||||| |||| | |||||||||||||||||||||||||||| || | | |||||
Sbjct 1167 TTGACTAGAAGGGTTAAGTTGCAGAATATATGGCAAGCGGCTTATACCTCAAGTCATATA 1226
Query 634 CGCGCTACACCAGTCACCACCTGCCAATACTGGGTCAGAATGTTGAACCCGAAGAAGCTA 693
| ||| |||||| |||||| | | | ||||||||||||||||||||||||||||||||
Sbjct 1227 CTTTCTAGACCAGTTACCACCAGTCGAGACTGGGTCAGAATGTTGAACCCGAAGAAGCTA 1286
Query 694 ATCGATGTTGGGTTTTCATGTCTTCGTGACAGAATGACAATGAACAGAACCGTCAAACTT 753
|||||||||||||| || | |||||||||||||||||||||| ||| |||||||||||
Sbjct 1287 ATCGATGTTGGGTTAACAAGGCTTCGTGACAGAATGACAATGAGCAGGACCGTCAAACTC 1346
Query 754 TACAAGTTACCAGATGCACCGATCACTCCTGGGTTTAGGGAAATGGAGGGACGTGATATC 813
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 1347 TACAAGTTACCAGATGCACCGATCACTCCTGGATTTAGGGAAATGGAGCGACGTGATGTC 1406
Query 814 CCGGCTGTTACAGAGTTGCTCAGGAACTACCTTAGCCAGTTTGGAGTAGCGACTGACTTT 873
|| |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1407 CCTGCTGTTACAGCGTTGCTCAGGAACTACCTTAGCCAGTTTGCAGTTGCGACTGACTTT 1466
Query 874 GATGAAAACGATGTCGAGCACTGGCTTCTCCCAAGAGAAAATGTCGTCTACAGTTACGTA 933
||||| ||||||||| ||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 1467 GATGACAACGATGTCAAGCACTGGCTTCTCCCAAGGGAAAATATTGTCTACAGTTACGTA 1526
Query 934 GTAGAAA-CTCATGA--CG--TGAT-T-ACTGACTTGTGCAGCTTCTACACTGTCC-CTT 985
|||| || | | ||| | |||| | |||||||| |||||||||| || | ||| ||
Sbjct 1527 GTAGTAAGCCC-TGAAACTCATGATGTCACTGACTTCTGCAGCTTCTGCAAT-TCCTCTA 1584
Query 986 TAACTGTCGTCGATAACCCGAAATACAAAACAGTGGAATGTGCTTATTCTTACTACAATG 1045
||||| || || ||||| |||||||| || |||||||||||||| ||| || |||||
Sbjct 1585 TAACTATCCCCGGTAACCGGAAATACACGACCCTGGAATGTGCTTATGCTTGCTGCAATG 1644
Query 1046 TGGCGACAAAGACCTCGTTACCCCAGCTGATGAATGATGTGCTAATCGTCTCTAAGCGAA 1105
| |||||| |||||||||| |||||||| ||||||||| ||||| |||||||||| ||
Sbjct 1645 TAGCGACACTGACCTCGTTATCCCAGCTGGTGAATGATGCCCTAATAGTCTCTAAGCAAA 1704
Query 1106 AAGGTTTTGATGTGTTATACGCGTTGGATGTGATGCACAATGAGAGTTTCTTGAAAGAGC 1165
||||||| |||||||| || || | |||||||||||| |||||||||||||||||||||
Sbjct 1705 AAGGTTTCGATGTGTTTTATGCCTCGGATGTGATGCAGAATGAGAGTTTCTTGAAAGAGT 1764
Query 1166 TGAAGTTTGATCTAGCAGATG-C-ACAGAT-GCACTACTATCTCTACAATTACCGTCTGA 1222
||| |||| ||| | | ||| | |||| | ||||||||||||||||||||||||| |||
Sbjct 1765 TGAGGTTTTATCCA-CT-ATGTCGACAG-TCGCACTACTATCTCTACAATTACCGTTTGA 1821
Query 1223 GAACTGCATTGAAGCCATCAGAACTTGGG 1251
||| |||||||||||||||||||||||||
Sbjct 1822 GAAATGCATTGAAGCCATCAGAACTTGGG 1850
> AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase
| chr5:23074867-23076901 FORWARD LENGTH=1720
Length=1720
Score = 1199 bits (649), Expect = 0.0
Identities = 1014/1185 (86%), Gaps = 45/1185 (4%)
Strand=Plus/Plus
Query 104 CAAAGACCCATAAGTTCTGGGAGACTCAA-CTGGTTGGGCAGTTCAAGGATATCGGAGAC 162
||||||| ||||||||||||||||||||| || ||||||||||| |||||||| || ||
Sbjct 403 CAAAGACTCATAAGTTCTGGGAGACTCAACCT-GTTGGGCAGTTTAAGGATATTGGGGAT 461
Query 163 ACGAGTTTGCCTGAAGGTCCAG-TTGAGCCCGCAACTCCGTTATCTGAGGTCAAGCAAGA 221
|||||||||||||||||||| | ||||||| |||||||| ||||||||||| ||||||||
Sbjct 462 ACGAGTTTGCCTGAAGGTCC-GATTGAGCCTGCAACTCCATTATCTGAGGTTAAGCAAGA 520
Query 222 GCCATACAACCTTCCTTCTCCTTATGAATGGACCACATGCGATTTGAGCTCTGATGATAT 281
||| ||||||||||||||| ||| || ||||| ||||| ||| ||| ||||||||||||
Sbjct 521 GCCGTACAACCTTCCTTCTGTTTACGAGTGGACGACATGTGATATGAACTCTGATGATAT 580
Query 282 GTGTTCAGAGGTTTACAACTTTCTCAAGGTACATC-ATCCT---GATGACG-GATATTTG 336
|||||||||||| |||||| ||||||| | ||| | || | ||||| | || || ||
Sbjct 581 GTGTTCAGAGGTATACAACCTTCTCAA-GAACAACTATGTTGAGGATGATGAGA-ATATG 638
Query 337 TTCGAGG--AAACTTATTCCAGGGAGTTTCTAAGGTGGGCATTGTGTCCACCTGGTTATT 394
||| ||| || ||| |||| ||||||||||||||||||| | ||||||| |||||||
Sbjct 639 TTC-AGGTTCAA-TTACTCCAAGGAGTTTCTAAGGTGGGCACTACGTCCACCGGGTTATT 696
Query 395 ACCAGAGCTGGCATATTGGAGTACGTGCCAAGACCTCGAAGAAACTCGTTGCTTTCATCA 454
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 697 ACCAGAGCTGGCATATTGGAGTTCGAGCCAAGACTTCGAAGAAACTCGTTGCTTTCATCA 756
Query 455 GTGGTGTGCCAGCAAGAATTAGGGTGCATGATGAGGTTGTTAAAATGGCAAAGATCAATT 514
| || |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct 757 GCGGCGTGCCAGCAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGCAGAGATCAATT 816
Query 515 TCTTGTGTGTTCACAAAAAGCTCAGGTCAAAGAGACTTGCTCCTGTCATGATCAAGGAGG 574
|||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 817 TCTTGTGTGTTCACAAGAAGCTCAGGTCTAAGAGGCTCGCTCCTGTCATGATCAAGGAGG 876
Query 575 TGACTAGAATGGTTCACTTGCAGAATATATGGCAAGCGGCTTATAGCTTACCTGA-T-AT 632
||||||||| |||||||||| |||| ||||||||||| ||||||| || | || | ||
Sbjct 877 TGACTAGAAGGGTTCACTTGGAGAACATATGGCAAGCAGCTTATA-CTG-CAGGAGTTAT 934
Query 633 ACG-CGCTACACCAGTCACCACCTGCCAATACTGGGTCAGAATG-TTGAACCCGAAGAAG 690
| | |||||||| |||||||||| ||||||||| ||| | |||||||||||||||
Sbjct 935 CCTTC-CTACACCAATCACCACCTGTCAATACTGGCACAGG-TCATTGAACCCGAAGAAG 992
Query 691 CTAATCGATGTTGGGTTTTCATGTCTTCGTGAC-AGAATGACAATGAACAGAACCGTCAA 749
||||| ||||||||||||||| | ||| ||| | ||||||||||||| ||||||| ||||
Sbjct 993 CTAATTGATGTTGGGTTTTCAAGGCTTGGTG-CGAGAATGACAATGAGCAGAACCATCAA 1051
Query 750 ACTTTACAAGTTACCAGATGCACCGATCACTCCTGGGTTTAGGGAAATGGAGGGACGTGA 809
||| |||||||||||||||||||||||||||||||| || ||| ||||||| ||| ||
Sbjct 1052 ACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTCAGGAAAATGGAACCACGCGA 1111
Query 810 TATCCCGGCTGTTACA-GAGTTGCTCAGGAACTACCTTAGCCAGTTTGGAGTAGCGACTG 868
| |||| ||||||||| | |||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1112 TGTCCCTGCTGTTACACG-GTTGCTTAGGAACTACCTCAGCCAGTTTGGAGTCGCGACTG 1170
Query 869 ACTTTGATGAAAACGATGTCGAGCACTGGCTTCTCCCAAGAGAAAATGTCGTCTACAGTT 928
|||||||||| || ||||||||||| ||||| |||||||||||| ||||||| ||||||
Sbjct 1171 ACTTTGATGAGAATGATGTCGAGCATTGGCTACTCCCAAGAGAAGATGTCGTGGACAGTT 1230
Query 929 ACGTAGTAGAAA-CTCATGA--CGT---GAT-T-ACTGACTTGTGCAGCTTCTACACTGT 980
|| ||||||||| | | ||| | | ||| | |||||||| ||||||||||||||| |
Sbjct 1231 ACCTAGTAGAAAGCCC-TGAAAC-TCACGATGTCACTGACTTCTGCAGCTTCTACACTCT 1288
Query 981 CCCTTTAACTGTCGTCGATAACCCGAAATACAAAACAGTGGAATG-TGCTTATTCTTACT 1039
||||| ||| || ||| ||||||||| |||| ||| || || | ||| ||||||||||
Sbjct 1289 CCCTTCAACCATCCTCGGTAACCCGAACTACACTACATTGAAA-GCTGCGTATTCTTACT 1347
Query 1040 ACAATGTGGCGACAAAGACCTCGTTACCCCAGCTGATGAATGATGTGCTAATCGTCTCTA 1099
|||||||||| ||| |||||||||| | |||||||||||||||| |||||| ||||| |
Sbjct 1348 ACAATGTGGCCACACAGACCTCGTTTCTTCAGCTGATGAATGATGCGCTAATTGTCTCAA 1407
Query 1100 AGCGAAAAGGTTTT-GATGTGTT-ATACGCGTTGGATGTGATGCACAATGAGAGTTTCTT 1157
||| |||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1408 AGC-AAAAGGGTTTCGATGTGTTCA-ACGCGTTGGATGTGATGCACAATGAGAGTTTCTT 1465
Query 1158 GAAAGAGCTGAAGTTTGATCTAGCAGATGCACAGA-TGCACTACTATCTCTACAATTACC 1216
|||||| |||||||||| | || ||||| ||| | | || |||||||||||||||||||
Sbjct 1466 GAAAGAACTGAAGTTTGGGCCAGGAGATGGACA-ACTTCATTACTATCTCTACAATTACC 1524
Query 1217 GTCTGAGAACTGCATTGAAGCCATCAGAACTTGGGATTGTTTTCT 1261
|| ||| || ||| ||||||||| | ||||| ||| ||||| |||
Sbjct 1525 GTTTGAAAAGTGCCTTGAAGCCAGCGGAACTCGGGCTTGTTCTCT 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5