BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322085
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44190.1 | Symbols: EDE1, QWRF5 | Family of unknown function... 2119 0.0
> AT2G44190.1 | Symbols: EDE1, QWRF5 | Family of unknown function
(DUF566) | chr2:18272191-18274497 FORWARD LENGTH=1745
Length=1745
Score = 2119 bits (1147), Expect = 0.0
Identities = 1338/1431 (94%), Gaps = 9/1431 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCGAGAATCGGCCGATCTATGGAGCACCCATCTACGCCGGCGATTACTGCTCCG 60
||||||||||||||||||||||| ||||| ||||||||||| || ||||||| |||||||
Sbjct 156 ATGGAGGCGAGAATCGGCCGATCCATGGAACACCCATCTACACCTGCGATTAATGCTCCG 215
Query 61 GCGCCGGTTCCTCCACCATCAACGCGGCGGCCGAGAGTAAGAGAAGTGAGCTCTAGATTC 120
|||||||||||||| || || ||| |||||||||||||||||||||||||||| ||||||
Sbjct 216 GCGCCGGTTCCTCCTCCTTCTACGAGGCGGCCGAGAGTAAGAGAAGTGAGCTCGAGATTC 275
Query 121 ATGTCTCCCGTTTCTTCGTCGTCATCGTCATCTTCCTCCTCTTCCGCCGGAGATCTCCAT 180
||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 276 ATGTCTCCCATTTCTTCTTCGTCATCGTCGTCTTCCTCTTCTTCCGCCGGAGATCTCCAT 335
Query 181 CTATTGACTTCAAATTCTCCCAGGCATCATCACCAACACCAGAATCA-ACGGTCGACTTC 239
| |||||||||||||||||| || |||||||||||||| |||||||| | | ||||||||
Sbjct 336 CAATTGACTTCAAATTCTCCTAGACATCATCACCAACATCAGAATCAGA-GATCGACTTC 394
Query 240 GGCTCAGAGGATGAGACGGCAGTTAAAAATGCCAGAGGGCGACGAGAATCGTCCTTCCGA 299
||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||
Sbjct 395 GGCTCAGAGGATGAGACGGCAATTGAAAATGCAAGAGGGAGACGAGAATCGTCCTTCCGA 454
Query 300 GACGGCGCGTAGCTTAGACTCGCCTTTTCCTCTTCAACAAGTCGACGGAGGTAAAATCCC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 455 GACGGCGCGTAGCTTAGACTCGCCTTTTCCTCTTCAACAAGTCGACGGAGGTAAAAACCC 514
Query 360 AAAGCAGCAGATACGATCTAAGCCGTTGAAAGAGAACGGTCACCGTCTCGACACACCAAC 419
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TAAGCAGCATATTCGATCTAAGCCGTTGAAAGAGAACGGTCACCGTCTCGACACACCAAC 574
Query 420 GACGGCGATGTTGCCGCCTCCGTCTAGATCGCGGCTGAGCCAACAGCGTCTGCTCACCGC 479
|||||| ||||||||||| ||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 575 GACGGCTATGTTGCCGCCACCGTCTAGATCGCGGCTGAACCAACAGCGTTTACTCACTGC 634
Query 480 CTCCGCTGCGACTAGGCTTCTCCGATCAAGCGGGATCTCGTTATCTTCCTCCACAGACGG 539
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 635 CTCCGCTGCGACTAGGCTTCTCCGATCAAGCGGGATCTCGTTATCATCTTCTACAGACGG 694
Query 540 TGACGAAGACAACAACAACAACAGAGAGATTTCCAAATCCAACGGCTCGGATCTGTTGCC 599
||| |||| | |||||||| |||||||||| ||||||||||||| | |||||||||||
Sbjct 695 TGAAGAAG---ATAACAACAATAGAGAGATTTTCAAATCCAACGGCCCAGATCTGTTGCC 751
Query 600 AACAATCAGAAACCAAGCAAA-GCTCTTCAACAATCCCACCGCTTCACCTCTTTCTCGAT 658
|||||| |||| ||||||||| || ||| |||| ||||||||| ||||| ||||||||||
Sbjct 752 AACAATTAGAACCCAAGCAAAGGC-CTTTAACACTCCCACCGCCTCACCACTTTCTCGAT 810
Query 659 CCCTGAGTTCTGATGATTCTTCCTTGTTTCGAGATGTAAGAGCTTCATTGTCGCTTAAAA 718
|||||||||| |||||| | || ||||||||||||| ||||||||||||||||||||||
Sbjct 811 CCCTGAGTTCCGATGATGCGTCGATGTTTCGAGATGTTAGAGCTTCATTGTCGCTTAAAA 870
Query 719 ATGGTGTTGGTTTGTCATTGCCTCCGGTTGCTCCTAATTCGAAGATTCAAGCTGATACAA 778
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 871 ATGGTGTTGGTTTGTCATTGCCTCCGGTGGCTCCTAATTCGAAGATTCAAGCCGATACAA 930
Query 779 AGAAACAGAAGAAAG-TGTTAGGACAACAAGCAGATATACATTCTTTGAAACTGCTCCAT 837
|||| |||||||||| | |||||||||||||| ||| | |||||| ||||||||||||||
Sbjct 931 AGAAGCAGAAGAAAGCT-TTAGGACAACAAGCGGATGTGCATTCTCTGAAACTGCTCCAT 989
Query 838 AACCGTTACTTGCAATGGCGATTTGCAAATGCAAATGCTGAGGTCAAAACACAATCCCAG 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 990 AACCGTTACTTGCAATGGCGATTTGCAAATGCAAATGCTGAGGTCAAAACACAATCTCAG 1049
Query 898 AAAGCACAAGCTGAGAGAATGTTTTATTCACTTGGTTTGAAAATGTCGGAGTTGTCTGAT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AAAGCACAAGCTGAGAGAATGTTTTATTCACTTGGTTTGAAAATGTCGGAGTTGTCTGAT 1109
Query 958 TCTGTACAGAGGAAACGCATAGAACTCCAACATTTACGGAGAGTTAAAGCTGTCACGGAG 1017
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1110 TCTGTACAGAGGAAACGCATAGAACTCCAACATTTACAGAGAGTTAAAGCTGTTACGGAG 1169
Query 1018 ATTGTAGAGTCTCAAACTCCTTCTTTGGAGCAATGGTCTGTTCTTGAAGATGAATTCTCA 1077
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1170 ATTGTAGAGTCACAAACTCCTTCTTTGGAGCAATGGGCTGTTCTTGAAGATGAATTCTCA 1229
Query 1078 AATTCTCTATTGGAAACAACTGAAGCTTTATTGAATGCTTCATTGCGGTTGCCTCTCGAT 1137
| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1230 ACTTCACTATTGGAAACAACTGAAGCTTTGTTGAATGCTTCATTGCGGTTGCCTCTCGAT 1289
Query 1138 TCAAAAATCAAGGTTGAGACTAAAGAGTTAGCAGAAGCCCTCGTTGTTGCTTCAAAGTCT 1197
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 1290 TCAAAAATCAAGGTTGAGACTAAAGAGTTAGCAGAAGCACTTGTTGTCGCTTCAAAATCT 1349
Query 1198 ATGGAAGGCATTGTGCAAAACATTGGAAACCTTGTACCTAAGACACAAGAGATGGAGACT 1257
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1350 ATGGAAGGCATTGTGCAAAACATTGGAAATCTTGTGCCTAAGACACAAGAGATGGAGACT 1409
Query 1258 TTGATGTCGGAACTAGCAAGAGTAAGCAGCATAGAGAAAGCATCAATAGAAGATTGCAGA 1317
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1410 TTGATGTCGGAATTAGCTAGAGTAAGCGGCATAGAGAAAGCATCAGTAGAAGATTGCAGA 1469
Query 1318 GTTGCAATGCTTAAAACACATTCATCACAGATTGAAGAATGCTATCTTAGAAGTCAGCTT 1377
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1470 GTTGCACTGCTTAAGACACATTCATCACAGATGGAAGAATGCTATCTTAGAAGTCAGCTT 1529
Query 1378 ATCCAGCACCAGAAGAAGTGCCATCAGCAAGAGTGCACAACTTCTGTTTGA 1428
|| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 ATTCAACACCAGAAGAAGTGCCATCAGCAAGAGTGCACAACTTCTGTTTGA 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5