BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322090
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44240.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1485 0.0
AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239) ... 610 9e-174
> AT2G44240.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18289824-18292345 FORWARD LENGTH=1490
Length=1490
Score = 1485 bits (804), Expect = 0.0
Identities = 939/1004 (94%), Gaps = 9/1004 (1%)
Strand=Plus/Plus
Query 1 ATGATGGGAGTGGCCAGTTTTGCGGTAGCTCTGATGGTAACGTCACTGATAATCGCTACT 60
||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 141 ATGATGGGAGTGGCCGGTTTTGCGGTAGCTCTGATGGTAACTTCACTGTTAATCGCTACT 200
Query 61 TGCGCTGATGGAAAAGAGTTCTCTCACCACCGGGAAGTTAAAGTACAAAGATTTTTGAAG 120
|||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||
Sbjct 201 TGCGCTGATGGAAAAGAGTTTTTTCATCACCGGGAAATTAAAGTACAAAGATTTTTGAAG 260
Query 121 CAGCTTAACAAGCCAGCTCTTAAATCCATTAAGAGTGAAGACGGCGATATAATTGACTGT 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 261 CAGCTTAACAAGCCAGCTCTTAAATCCATTAAGAGTGAAGACGGAGATATAATTGATTGT 320
Query 181 GTTCCAATAACTAGCCAACCCGCTTTTGATCATCCTTTGCTTAAAAATCACACCATTCAG 240
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 GTTCTAATAACTAGCCAACCAGCTTTTGATCATCCTTTGCTTAAAAATCACACCATTCAG 380
Query 241 GTAAAACCAAGTTTTGTCCCAGAAGGGGAAGGTGACTCTACGTACATGAAGAAGAAGACA 300
||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 381 GTAAAACCAAGTTTTATCCCGGAAGGGGAAGGTGACTCTACGTACACCAAGAAGGAGACA 440
Query 301 AAGGCTACTCAAGTGTGGCACAAAGATGGAGAGTGCCCAGAAAAAACAATCCCGATAAGA 360
|| ||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 441 AAAGCTACTCAAGTGTGGCAGAAATATGGAGAGTGCCCAGAAAACACTATCCCGATAAGA 500
Query 361 AGAACaaaaaaaGAAGATATCTTACGAGCAAAATCCCTTGAAAGATTCGGGAAAAAGAAT 420
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 501 AGAACAAAAAAAGAAGAAATCTTACGAGCAAAATCCCTTGAAAGTTTCGGGAAAAAGAAT 560
Query 421 CATCAATACAGTCCTGAAGATACATTCTCTAGTCCAAATTATCACCATGAGTACGCGTTC 480
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 561 CATCAATACATTCCTGAAGATACAT-CT--AGTCCAAATTATCACCATGAGTACGCGTTC 617
Query 481 ATGGGTGTGAGAAACGGAAAATTTTACGGGACAAAAGCCTCGATAAATATCTGGAAACCA 540
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 618 ATGGGTGTGAGAAACGGAAAGTTTTACGGGACAAAAGCCTCGATAAATGTCTGGAAACCA 677
Query 541 AATGTAGCAGA-TCCCAGCGAGTTCAGCTTGTCACAGACTTGGCTCGTATCTGGAG-TAG 598
|||||||| | ||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 678 GATGTAGCA-ACTCCCAGCGAGTTCAGCTTGTCACAGACTTGGATCGTATCTGGAGAT-G 735
Query 599 GCACTAGTCGTAACACAATTGAAGCTGGTTGGCAGGTTTATCCAGGAATGTACGGTGATA 658
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 736 GCACTAGTCGTAATACTATTGAAGCTGGTTGGCAGGTTTATCCAGGAATGTACGGTAATA 795
Query 659 ATAATCCTAGATTATTTGTTTATTGGACCAGCGATGGATACCAAAAGACAGGATGCTACA 718
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 796 ATGATCCTAGATTATTTGTTTATTGGACCAGCGATGGATACCAAAAGACAGGATGCTATA 855
Query 719 ATCTCCTGTGCGGCGGTTTTGTTCAGACGAACAACCAGTACTCTGTAGGTGGATCCTACA 778
||||| | ||||| |||||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 856 ATCTCGTCTGCGGTGGTTTTGTTCAGACGACCAACCAATACACTGTAGGTGGATCCTACG 915
Query 779 ATACCGTGTCAGAATACGACGGAGCTCAACTAAGT-CTCAACCTACTTATATGGAAGGAC 837
||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 916 TTACCGCGTCACAATACGACGGAGCTCAACTA-GTTCTCAACCTACTTATATGGAAGGAC 974
Query 838 CAAAAAACAGGAAACTGGTGGCTAAAGATAAATGACAATGACATTATCGGGTACTGGCCC 897
| ||||||||||||||||||||||||||| |||||||| || |||| |||||||||||
Sbjct 975 CCAAAAACAGGAAACTGGTGGCTAAAGATTAATGACAACGATGTTATAGGGTACTGGCCT 1034
Query 898 GGCTCGTTGTTCAATTCTCTAGGAGATGGAGCTATAAAAGTTGAATGGGGAGGCGAAATC 957
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1035 GGCTCGTTGTTCAATTCTCTAGGAGATGGAGCTATAAAAGTTGAATGGGGTGGCGAAATC 1094
Query 958 TTCACGCAAACCAGTAAGACACACACAACCACCGATATGGGAAG 1001
||| ||| ||||||| | | ||||||||||||||||||||||||
Sbjct 1095 TTCGCGCCAACCAGTGATAGACACACAACCACCGATATGGGAAG 1138
Score = 165 bits (89), Expect = 8e-40
Identities = 110/120 (92%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 1001 GACTTTACTCCGT-TGCTGATAATCGTAATTGTTACAACGTTGTAGCAGGAAATGGTGGA 1059
||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 1231 GACTTTACTCC-TATGCTGATAATCGTAATTGTTACAGCGTTGTACCAGGAAATGCTGGA 1289
Query 1060 ACTCCCTTTGGTACTCATTTCTTCTATGGTGGTCCTGGTCAGAACGCTATGTGCCCTTGA 1119
||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1290 ACTTCCTTTGGTACTCATTTCTTCTATGGTGGTCCTGGTCAGAACGTTAAATGCCCGTGA 1349
> AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18283803-18285837 FORWARD LENGTH=1359
Length=1359
Score = 610 bits (330), Expect = 9e-174
Identities = 779/987 (79%), Gaps = 66/987 (7%)
Strand=Plus/Plus
Query 48 GATAATCGCTACTTGCGCTGATGGAAA-AGAGTTCTCTCACCACCGGGAAGTTAAAGTAC 106
|||| || ||||||||| ||||||||| | |||||| | | ||||||||| |||||||||
Sbjct 48 GATATTCACTACTTGCGTTGATGGAAACA-AGTTCTTTTATCACCGGGAAATTAAAGTAC 106
Query 107 AAAGATTTTTGAAGCAGCTT-AACAAGCCAGCTCTTAAATCCATTAAGAGTGAAGACGGC 165
|| |||||| | | || |||||||| |||||||||||||||||||||||||| ||
Sbjct 107 TTCGACATTTGAAAC-GGTTCAACAAGCCTGCTCTTAAATCCATTAAGAGTGAAGATGGA 165
Query 166 GATATAATTGACTGTGTTCCAATAACTAGCCAACCCGCTTTTGATCATCCTTTGCTTAAA 225
||| |||| || |||||||| || |||| ||||| ||||||||||||| ||| ||||||
Sbjct 166 GATGTAATAGATTGTGTTCCTATCACTAATCAACCAGCTTTTGATCATCATTTACTTAAA 225
Query 226 AATCACACCATTCAGGTAAAACCAAGTTTTGT-CCCAGAAGGGGAAGGTGACTCTACGTA 284
|| || ||||| ||| | | ||| || ||| | ||| || || |||| ||||||||
Sbjct 226 AACCATACCATCCAGATGAGACCGAG-TTTCTACCC-----GGTAA-GTGATTCTACGTA 278
Query 285 CATGAAGAAGAAGACAAAGGC--T-ACTCAAGTGTGGCACAAAGATGGAGAGTG-CCCAG 340
|| |||| | || ||||||| | ||||| || |||||||| | ||||||||| ||||
Sbjct 279 CACCAAGAGGGAGGCAAAGGCTGTAACTCAGGTTTGGCACAAGGCTGGAGAGTGTCCCA- 337
Query 341 AAAAAACAATCCCGATAAGAAGAACaaaaaaaGAAGATATCTT-ACGAGCAAAATCCCTT 399
|||| || | || || ||||||||||| ||||||||| |||| | || |||||| || |
Sbjct 338 AAAACACTGTTCCAATCAGAAGAACAAAGAAAGAAGATCTCTTGA-GACCAAAAT-CCAT 395
Query 400 GA-AAGATTCGGGAAAAAGAATCATCAATA-CAGTCCTGAAG-A-TACATTCTCTAG-TC 454
| || || |||| |||| ||||||| | || ||| ||| | |||| || | | ||
Sbjct 396 CAGGAGTTTTGGGAGAAAGTCTCATCAA-AGCATTCC--AAGAACTACAACCT-TTGATC 451
Query 455 CAA-ATTATCACCATGAGTACGCGTTCATGGGTGTGAGAAACGGAAAATTTTACGGGACA 513
||| |||| ||| |||||||| | |||||||||||||| ||||||||||| ||||||
Sbjct 452 CAACATTA-GGTCATCAGTACGCGCTAATGGGTGTGAGAAATGGAAAATTTTATGGGACA 510
Query 514 AAAGCCT-CGATAAATATCTGGAAACCAAATGTAGCAGA-TCCCAGCGAGTTCAGCTTGT 571
||| | | |||||| | ||||||||| |||| || | ||| | ||||| ||||||
Sbjct 511 GAAG-TTGCAATAAATCTGTGGAAACCATATGT-CCAAATTCCTAAAGAGTTTAGCTTGG 568
Query 572 CACAGACTTGGCTCGTATCTGG-AGTAGGCACTAGTCGT-AACACAATTGAAGCTGGTTG 629
| ||||||||| | || || || | | ||| |||||| | ||||| ||||||||||||||
Sbjct 569 CTCAGACTTGGGTTGTGTCCGGAAAT-GGCTCTAGTC-TAAACACCATTGAAGCTGGTTG 626
Query 630 GCAGGTTTATCCAGGAA-TGTACGGTGATAATAATCCTAGATTATTTGTTTATTGGAC-C 687
||||||||||||| ||| | || | |||||||||||||||||| |||||||||||||| |
Sbjct 627 GCAGGTTTATCCA-GAACTATATGATGATAATAATCCTAGATTCTTTGTTTATTGGACGC 685
Query 688 AGCGATGGATACC-AAAAGACAGGATGCTACAATCTCCTGTGCGGC-GGTTTTGTTCAGA 745
| ||||| |||| |||| || ||||||||||| || || ||| | ||||||||||| |
Sbjct 686 -GTGATGGGTACCGAAAA-ACGGGATGCTACAACCTTCTCTGC-TCAGGTTTTGTTCAAA 742
Query 746 CGAACAA-CCAGTACTCTGTAGGTGGATCCTA-CAATACCGTGTCA-GAATA-CGACGGA 801
||| || | | ||| | |||||||||| | | || ||| ||||| | || || |||
Sbjct 743 CGAGTAATCGA-TACACCGTAGGTGGAT-CAATCACCACCATGTCACG-CTACCG-TGGA 798
Query 802 GCTCAACTAAG-TCTCAACC-TACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGC 859
||||| || | |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 799 ACTCAA-TATGATCTC-TCCGTACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGC 856
Query 860 TAA-AGATAAATGACAATGACATTATCGGGTACTGGCCCGGCTCGTTGTTCAATTCTCTA 918
| | || | ||||| || ||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 857 TTAGAG-TCAATGAAAAAGACGTTATTGGGTACTGGCCAGGCTCGTTGTTCAATTCTCTA 915
Query 919 GGA-GATGGAGCTATAAAAGTTGAATGGGGAGGCGAAATC-TTCACGCAAA--CCAGTAA 974
||| || | ||||| | ||||||||||||||| |||||| || || |||| || ||
Sbjct 916 GGAAGA-GAAGCTACGAGAGTTGAATGGGGAGGTGAAATCATTAACTCAAAGACCGGTGG 974
Query 975 GACACACACAACCACCGATATGGGAAG 1001
|| |||||| ||||| |||||||||||
Sbjct 975 GAGACACACTACCACAGATATGGGAAG 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5