BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322132
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44690.1 | Symbols: ARAC9, ATROP8, ROP8 | Arabidopsis RAC-li... 865 0.0
> AT2G44690.1 | Symbols: ARAC9, ATROP8, ROP8 | Arabidopsis RAC-like
9 | chr2:18429264-18430804 FORWARD LENGTH=810
Length=810
Score = 865 bits (468), Expect = 0.0
Identities = 579/631 (92%), Gaps = 14/631 (2%)
Strand=Plus/Plus
Query 1 ATGTCAGCTTCAGTGGCTGCAACAGCAACACCATCAACAACAGCTACAACGTTTATAAAG 60
|||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 13 ATGTCAGCTTCAATGGCTGCAACATCAACATCATCAGCAACAGCTACAACGTTTATAAAG 72
Query 61 TGTGTCACTGTTGGCGATGGAGCTGTGGGCAAAACTTGTCTTCTTATCTCCTACACCAGC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 73 TGTGTCACTGTTGGCGATGGAGCTGTGGGCAAAACTTGTCTTCTTATTTCCTACACCAGC 132
Query 121 AACACTTTTCCTACTGATTATGTTCCAACAGTGTTCGACAATTTTAGTGCAAATGTTTTA 180
||||| || || |||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 133 AACACGTTCCCCACTGATTATGTTCCAACAGTGTTCGACAATTTCAATGCTAATGTTTTA 192
Query 181 GTCGATGGCAAAACTGTCAATCTGGGACTCTGGGATACTGCTGGTCAAGAAGACTACAAT 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 193 GTCGATGGTAAAACTGTCAATCTGGGTCTCTGGGATACTGCTGGTCAAGAAGACTACAAT 252
Query 241 AGGCTTAGACCATTGAGTTACAGAGGAGCAGATGTTTTCATTCTTGCTTTCTCACTTATT 300
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 253 AGGGTTAGACCATTGAGTTACAGAGGAGCAGATGTTTTCATTCTTGCCTTCTCACTTATT 312
Query 301 AGCAGGCCTAGCTTTGAGAACATTGCTAAAAAG------C------TGAGACATTATGCC 348
||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 313 AGCAGGCCTAGCTTTGAGAACATTGCTAAAAAGTGGGTACCCGAGCTGAGACATTATGCC 372
Query 349 CCAACCGTGCCTATTGTTCTTGTGGGAACCAAATTAGATCTAAGAGACGACAAGCAGTTC 408
|| || |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 373 CCGACTGTGCCTATTGTTCTTGTGGGAACCAAATCAGATCTAAGAGACAACATGCAGTTC 432
Query 409 CCAATGAATTATCCAGGTGCTTGCACAATCT-CCACAGAACAAGGTCAAGAGCTAAGAAA 467
|||| |||||||||||||||||||||||||| || ||||||| |||||||| ||||||||
Sbjct 433 CCAAAGAATTATCCAGGTGCTTGCACAATCTTCC-CAGAACAGGGTCAAGAACTAAGAAA 491
Query 468 GGAGATAGGAGCATTAGCATATATTGAGTGCAGCTCAAAAACACAACTGAATGTAAAAGG 527
||| ||||||||||||||||| || ||||||||||||||| ||||| |||| |||||||
Sbjct 492 GGAAATAGGAGCATTAGCATACATAGAGTGCAGCTCAAAAGCACAAATGAACGTAAAAGC 551
Query 528 CGTATTTGATGCAGCCATAAAAGTAGTATTACAGCCTCCTTCAAAGACTAAGAAGCAAAA 587
||| ||||||| ||| || |||||||| ||||| |||||||||||||||||||||| |||
Sbjct 552 CGTGTTTGATGAAGCGATCAAAGTAGTTTTACATCCTCCTTCAAAGACTAAGAAGCGAAA 611
Query 588 GAGAAAGATTGGTTTATGCCATGTTCTTTGA 618
||||||||| |||||||||||||||||||||
Sbjct 612 GAGAAAGATCGGTTTATGCCATGTTCTTTGA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5