BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322142
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44810.1 | Symbols: DAD1 | alpha/beta-Hydrolases superfamily... 1770 0.0
> AT2G44810.1 | Symbols: DAD1 | alpha/beta-Hydrolases superfamily
protein | chr2:18479053-18480197 FORWARD LENGTH=1145
Length=1145
Score = 1770 bits (958), Expect = 0.0
Identities = 1066/1119 (95%), Gaps = 3/1119 (0%)
Strand=Plus/Plus
Query 229 CCCTCTGGTTCGAATAACCCGGTTAAGCTTGGCCGGAGATGGATGGAGTACCAGGGGCTT 288
||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CCCACTGGTTCGAGTATCCCGGTTAAGCTTGGCCGGAGATGGATGGAGTATCAGGGGCTT 60
Query 289 CAAAATTGGGATGGTCTTTTAGACCCATTGGACGAAAATCTCCGGCGTGAGATTCTCCGG 348
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 CAAAATTGGGACGGTCTTTTAGACCCATTGGACGACAATCTCCGGCGAGAGATTCTCCGG 120
Query 349 TACGGTCAATTCGTCGAATCGGCTTATCAAGCGTTTGATTTCGATCCTTCTTCTCCAACC 408
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 121 TACGGTCAATTTGTCGAATCGGCTTATCAAGCATTTGATTTCGATCCTTCCTCTCCAACC 180
Query 409 TACGCGACATGCCGGTTTCCGAGGAGCACTTTGTTAGACCGATCCGGTTTACCTAATTCC 468
|||| |||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 181 TACGGGACATGCCGGTTTCCGAGGAGCACGTTGTTAGAGCGATCCGGTTTACCCAACTCC 240
Query 469 GGTTATCGACTAACGAAGAACCTTCGTGCCACGTCAGGTATTAACTTGCCACGTTGGATT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTATCGACTAACGAAGAACCTTCGTGCCACGTCAGGTATTAACTTGCCACGTTGGATT 300
Query 529 GAGAAAGCGCCAAGCTGGATGGCTACACAATCCAGCTGGATTGGTTACGTGGCAGTTTGC 588
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAGAAAGCGCCAAGCTGGATGGCTACACAATCTAGCTGGATTGGTTACGTGGCAGTTTGC 360
Query 589 CAAGACAAGGAAGAGATCTCACGGCTTGGGCGTAGAGACGTCGTCATCTCCTTCCGTGGA 648
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGGACAAAGAAGAGATCTCGCGGCTTGGGCGTAGAGACGTCGTCATCTCCTTCCGTGGA 420
Query 649 ACCGCCACGTGTCTCGAATGGTTAGAGAACCTTCGCGCCACGCTGACTCATCTCCCTAAT 708
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCGCCACGTGTCTCGAGTGGTTAGAGAACCTTCGCGCCACGCTGACTCATCTCCCTAAT 480
Query 709 GGGCCTACTGGACCAAATCTAAACGGGTCTAACTCTGGGCCCATGGTCGAGAGCGGGTTT 768
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GGGCCTACTGGAGCAAATCTAAACGGGTCTAACTCTGGGCCCATGGTTGAGAGCGGGTTT 540
Query 769 TTAAGCTTGTACACTTCAGGGGTTCACAGTTTGAGAGACATGGTCAGAGAAGAGATCTCA 828
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 541 TTAAGCTTGTATACTTCAGGTGTTCACAGTTTGAGAGACATGGTAAGAGAAGAGATCGCA 600
Query 829 AGGCTACTCCAATCTTACGGCGACGAGCCGCTAAGTGTAACGATAACCGGCCACAGCCTC 888
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 AGGCTACTCCAATCTTACGGCGACGAGCCGTTAAGTGTAACGATAACCGGTCACAGCCTC 660
Query 889 GGAGCTGCGATCGCGACACTAGCCGCGTATGATATCAAAACGACGTTTAAACGTGCGCCG 948
|| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 661 GGCGCTGCGATCGCGACACTAGCAGCTTACGATATCAAAACGACGTTTAAACGTGCGCCT 720
Query 949 ATGGTTACCGTAATATCTTTTGGAGGTCCACGTGTCGGAAACAGATGCTTTCGGAAACTC 1008
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGGTTACCGTAATATCTTTCGGAGGTCCACGTGTCGGAAACAGATGCTTTCGGAAACTC 780
Query 1009 CTTGAGAAGCAAGGCACGAAGGTTCTAAGAATCGTGAACTCCGACGACGTTATCACCAAA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 CTTGAGAAGCAAGGCACGAAGGTTCTAAGAATCGTGAACTCCGACGACGTCATCACCAAA 840
Query 1069 GTTCCTGGAGTCGTTTTAGAAAACAGAGAGCAAGAGAACGTGAAGATGTCGACGACTTCG 1128
||||||||||| ||||||||||||||||||||||| ||||| |||||| | | | | |||
Sbjct 841 GTTCCTGGAGTTGTTTTAGAAAACAGAGAGCAAGATAACGTTAAGATGAC-A-G-CGTCG 897
Query 1129 ATAATGCCGAGCTGGATACAGAGACGCGTGGAGGAGACGCCGTGGGTTTACGCCGAGGTC 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 898 ATAATGCCGAGCTGGATACAGAGACGCGTGGAGGAGACGCCGTGGGTTTACGCTGAAATC 957
Query 1189 GGTAAGGAGCTTAGGCTGAGCAGCCGTGACTCGCCGCACTTGAACAGCATCAATGTGGCT 1248
|||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 958 GGTAAGGAGCTTCGGCTGAGTAGCCGTGACTCGCCGCACTTGAGCAGCATCAATGTGGCC 1017
Query 1249 ACGTGTCACGAGCTGAAAACGTATTTACATTTGGTAGACGGGTTTGTGAGCTCCACGTGT 1308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACGTGTCATGAGCTGAAAACGTATTTACATTTGGTAGACGGGTTTGTGAGCTCCACGTGT 1077
Query 1309 CCATTCAGAGAGACGGCTCGGAGAGTTCTCCATAGATGA 1347
||||||||||| || ||||||||||||||||||||||||
Sbjct 1078 CCATTCAGAGAAACAGCTCGGAGAGTTCTCCATAGATGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5