BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322168
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65680.1 | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expans... 1101 0.0
AT2G45110.1 | Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 | expans... 793 0.0
AT1G65681.1 | Symbols: EXPB6 | beta expansin 6 | chr1:24428875-... 695 0.0
> AT1G65680.1 | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin
B2 | chr1:24427266-24428399 FORWARD LENGTH=822
Length=822
Score = 1101 bits (596), Expect = 0.0
Identities = 725/788 (92%), Gaps = 6/788 (1%)
Strand=Plus/Plus
Query 7 ATTCTTTTCGTAGAGCGATATTACATGATCATGAACTTACTCTTTGCTCTAACTTGTCTC 66
|||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 7 ATTCTTGTCGTAGATCGATACTACATGCTCATGAACTTACTCTTTGCTCTAACTTGTCTC 66
Query 67 CTGTTAAACTTAACTCATTGCTTTAGCCCCAAGAAACTCAACATTTCAGCCGCCACGACC 126
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 67 CTCTTGAACTTAACTCATTGCTTTAGCCCCAAGAAATTCAACATTTCAGCCGCCACGACC 126
Query 127 AGTGATTCTGATTGGTCTATTGCCGGAGCTACGTGGTATGGCAGCCCCACCGGATACGGA 186
|| ||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||
Sbjct 127 AGCGATTCTGATTGGTCTATCGCCGGATCTACGTGGTATGGTAACCCCACCGGATACGGA 186
Query 187 AGCGACGGTGGAGCTTGTGGTTATGGAACTGCCGTGGCACAACCTCCGTTTTCGAGCATG 246
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |||
Sbjct 187 AGCGACGGTGGAGCTTGTGGTTATGGAAATGCTGTTGCACAACCTCCGTTTTCGAAAATG 246
Query 247 GTATCAGCAGGCGGTACGTCGTTGTTCAAGTCAGGGAAAGGATGTGGCGCATGTTACCAG 306
|||||||| || ||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 247 GTATCAGCCGGAGGTCCGTCGTTGTTCAAGTCAGGAAAAGGATGTGGTGCATGTTACCAG 306
Query 307 ATAAAATGCACTTCGAAATCTGCATGTTCGAAAAATCCTGTTACGATAGTCATCACAGAT 366
||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||
Sbjct 307 GTAAAATGCACTTCGAAATCGGCATGTTCGAAAAATCCTGTTACGGTGGTCATTACAGAT 366
Query 367 GAATGTCCTGGATGCGTTACAG-AGTCGGTCCATTTCGATTTGAGTGGTACAGCGTTTGG 425
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 367 GAATGTCCTGGATGCGTTA-AGGAGTCGGTCCATTTCGATTTGAGTGGTACAGCGTTTGG 425
Query 426 TGCCATGGCGATTTCTGGTAAAGATAGTCAGCTTCGCAATG-CAGGAGTTTTGCAGATTC 484
||||||||| ||||||||| ||||||||||||||||||||| | |||| ||||||||||
Sbjct 426 TGCCATGGCAATTTCTGGTCAAGATAGTCAGCTTCGCAATGTC-GGAGAATTGCAGATTC 484
Query 485 TTTATAGAAAAG-TTGAGTGCAACTATGTTGGCAAAACGGTGACGTTTCAAGTGGATAAA 543
|||||| ||||| |||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 485 TTTATA-AAAAGGTTGAGTGCAACTATATAGGCAAAACGGTGACATTTCAAGTGGATAAA 543
Query 544 GGTTCAAACGCTTACTACTTTGCGGCTTTAGTTGAGTATGAAAACGGAGACGGCGAAATT 603
|||||||||||| ||| ||| |||| ||| |||| ||||| |||||||||||||||||||
Sbjct 544 GGTTCAAACGCTAACTCCTTCGCGGTTTTGGTTGCGTATGTAAACGGAGACGGCGAAATT 603
Query 604 GGCCGAGTCGAACTCAAACAAGCTCTAGATTCTGACACGTGGCTGTCTATGACCCAATTA 663
|||||| | |||||||||||||||||||||||||||| |||| ||||||||| ||||| |
Sbjct 604 GGCCGAATTGAACTCAAACAAGCTCTAGATTCTGACAAGTGGTTGTCTATGAGCCAATCA 663
Query 664 TGGGGTGCCGTGTGGAAGCTCGACGTGTCCTCACCTTTGCGTGCCCCGCTGTCTCTCCGA 723
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 664 TGGGGCGCCGTGTGGAAGCTCGACGTGTCGTCACCTTTGCGTGCCCCGCTCTCTCTCCGA 723
Query 724 GTGACTTCGCTGGACTCCGGCGAGACTGTTGTCGCTTCCAATGTCATTCCGGCAGGCTGG 783
||||||||| |||| |||||| |||||||||| ||||||||||||||||| ||| ||||
Sbjct 724 GTGACTTCGTTGGAATCCGGCAAGACTGTTGTGGCTTCCAATGTCATTCCCGCAAACTGG 783
Query 784 CAACCCGG 791
||||||||
Sbjct 784 CAACCCGG 791
> AT2G45110.1 | Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 | expansin
B4 | chr2:18599501-18601339 FORWARD LENGTH=956
Length=956
Score = 793 bits (429), Expect = 0.0
Identities = 589/660 (89%), Gaps = 35/660 (5%)
Strand=Plus/Plus
Query 788 CCGGAGGAGCTTGTGGGTACGGTTTCGCGGTGGCTAATCCACCACTATATGCGATGGTTT 847
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 223 CCGGAGGAGCTTGTGGGTACGGTTCCGCGGTGGCTAATCCACCACTATACGCGATGGTTT 282
Query 848 CAGCCGGAGGTCCTTCATTGTTCAACAATGGAAAAGGATGTGGAGCATGTTATCAGATTG 907
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 283 CAGCCGGAGGTCCTTCGCTGTTCAACAATGGAAAAGGATGTGGAACATGTTATCAGGTTG 342
Query 908 TATGCAGCGAGA-ATCCAGCGTGTTCGGGGAGACCAATAACAGTGACGATAACCGACGAG 966
|||||| || || |||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 343 TATGCATCG-GACATCCAGCGTGCTCGGGGTCACCAATAACGGTGACGATAACCGACGAG 401
Query 967 TGCCCTGGTGGTCCTTGCGCCTCTGAACCAGCCCACTTTGATCTTGGCGGCAAAGCCATG 1026
||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 402 TGCCCTGGTGGTCCTTGCGCCTCTGAACCAGTCCACATTGATCTTAGCGGCAAAGCCATG 461
Query 1027 GGTGCCTTAGCCAAACCTGGCCAAGCCGATCGACTTCGATCCGCTGGTGTTCTACGTGTT 1086
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 462 GGTGCCTTAGCCAAACCTGGCCAAGCCGATCAACTTCGATCCGCTGGTGTTATACGTG-- 519
Query 1087 AACTACAAACGGTACAATTATTTACTTAAAGAATTTTTCGCGGCATGTTTATATAGAGGA 1146
| | ||| ||| | | || | | ||||||||||||||| |||||
Sbjct 520 ---T-C-AAC--TAC-A--A---AC-----G------T-GCGGCATGTTTATATCGAGGA 554
Query 1147 ACTAACATAG-CTTTCGGTATGGATC-CTGGAGCAAATCCATACTACATTGCATTTGTTG 1204
|||||||||| |||| ||||||| | ||||||||||||| ||||||||| |||||||||
Sbjct 555 ACTAACATAGTTTTTC-GTATGGA-CGCTGGAGCAAATCCGTACTACATTTCATTTGTTG 612
Query 1205 TCGAGTATGAAGACGGCGATGGAGATTTGTCCTATGTTGAACTTCAACCAGCCGGCGGAA 1264
| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 613 TTGAGTATGAAAACGGCGATGGAGATTTGTCCAATGTTGAAATTCAACCAGCCGGCGGAA 672
Query 1265 ATTTCATCCCCATGCAAGAAATGAGGTCCGCCGTATGGAAGGTCAACTCTGGCAGTGCTC 1324
||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 673 GTTTCATCTCCATGCAAGAAATGAGATCCGCCGTATGGAAGGTCAACTCAGGCAGTGCCC 732
Query 1325 TAAAAGGACCATTCAACATCAGACTTACTTCTGCTGAATCTCATAAAGTAGTCGTCGCTT 1384
||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct 733 TAAGAGGACCATTCAACATTAGACTTACTTCTGGTGAATCTCATAAAGTAATCGTCGCTT 792
Query 1385 ATAATGTTATTCCGGCGAATTGGAAACCT-AGTGAAACTTACCGTTCCATTGTTAACTTT 1443
||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||
Sbjct 793 ATAATGTTATTCCGGCGAATTGGAAACCTGAC-GAATCTTACCGTTCAATTGTTAACTTT 851
> AT1G65681.1 | Symbols: EXPB6 | beta expansin 6 | chr1:24428875-24430670
FORWARD LENGTH=672
Length=672
Score = 695 bits (376), Expect = 0.0
Identities = 560/644 (87%), Gaps = 31/644 (5%)
Strand=Plus/Plus
Query 808 GGTTTCGCGGTGGCTAATCCACCACTATATGCGATGGTTTCAGCCGGAGGTCCTTCATTG 867
|||||||| ||||||||||||||| |||| | |||||||||||| |||||||||||| ||
Sbjct 58 GGTTTCGCAGTGGCTAATCCACCATTATACGGGATGGTTTCAGCTGGAGGTCCTTCAGTG 117
Query 868 TTCAACAATGGAAAAGGATGTGGAGCATGTTATCAGATTGTATGCAGCGAGAATCCAGCG 927
||||||||||||| |||||||||| |||||| ||||||| |||||| | | |||||||
Sbjct 118 TTCAACAATGGAATAGGATGTGGAACATGTTTTCAGATTCTATGCAATGGGCATCCAGCA 177
Query 928 TGTTCGGGGAGACCAATAACAGTGACGATAACCGACGAGTGCCCTGGTGGTCCTTGCGCC 987
|| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 178 TGCTCGAGGAGACCAATAACGGTGACGATAACCGACGAATGCCCTGGTGGTCCTTGTGCC 237
Query 988 TCTGAACCAGCCCACTTTGATCTTGGCGGCAAAGCCATGGGTGCCTTAGCCAAACCTGGC 1047
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 238 TCTGAACCAGCCCACTTTGATCTTAGCGGCAAAGCCATGGGTGCCTTAGCCAGACCTGGC 297
Query 1048 CAAGCCGATCGACTTCGATCCGCTGGTGTTCTACGTGTTAACTACAAACGGTACAATTAT 1107
|||| |||||||||||||| | | | || ||||| || || | | |
Sbjct 298 CAAGGCGATCGACTTCGAT---C--G-G--CT-GGTGTT--CT----AC-G------TGT 335
Query 1108 TTACTTAAAGAATTTTTCGCGGCATGTTTATATAGAGGAACTAACATAGCTTTCGGTATG 1167
|||| || || | || || |||||||||| || ||||||||||||||||| |||||
Sbjct 336 TTAC-TACAG-A---CGCGTGGAATGTTTATATCGAAGAACTAACATAGCTTTCCGTATG 390
Query 1168 GATCCTGGAGCAAATCCATACTACATTGCATTTGTTGTCGAGTATGAAGACGGCGATGGA 1227
|| |||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 391 GACCCTGGAGCAAATCCGTACTACATTTCATTTGTTGTCGAGTATGAAAACGGTGATGGA 450
Query 1228 GATTTGTCCTATGTTGAACTTCAACCAGCCGGCGGA-AATTTCATCCCCATGCAAGAAAT 1286
|||||| ||||| | ||| |||||||||||| |||| || ||||||||||||||||||||
Sbjct 451 GATTTGGCCTATATAGAAATTCAACCAGCCGACGGAGAA-TTCATCCCCATGCAAGAAAT 509
Query 1287 GAGGTCCGCCGTATGGAAGGTCAACTCTGGCAGTGCTCTAAAAGGACCATTCAACATCAG 1346
|||||| || ||||||||| ||| |||||||||| |||||| ||||||||||||||||||
Sbjct 510 GAGGTCTGCTGTATGGAAGATCAGCTCTGGCAGTCCTCTAACAGGACCATTCAACATCAG 569
Query 1347 ACTTACTTCTGCTGAATCTCATAAAGTAGTCGTCGCTTATAATGTTATTCCGGCGAATTG 1406
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 570 ACTTACTTCTGCTGAATCTCATAAAGTAGTCCTAGCTTATAATGTTATTCCGGCGAATTG 629
Query 1407 GAAACCTAGTGAAACTTACCGTTCCA-TTGTTAACTTTAAGTAG 1449
|||||||| ||||||||||||||| | |||| ||||||||||||
Sbjct 630 GAAACCTAATGAAACTTACCGTTC-AGTTGTGAACTTTAAGTAG 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5