BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322199

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45450.1 | Symbols: ZPR1 | protein binding | chr2:18733275-1...   464    2e-130


> AT2G45450.1 | Symbols: ZPR1 | protein binding | chr2:18733275-18734127 
REVERSE LENGTH=753
Length=753

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 271/280 (97%), Gaps = 3/280 (1%)
 Strand=Plus/Plus

Query  1    ATGTGTTTGAGTTCTTCAGAACCATTTTCAGACAGACCCACGAGATTAGTTTTGTACCTC  60
            |||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct  199  ATGTGTTTAAGTTCTTCAGAAACATTTTCAGACACACCCACGAGATTAGTTTTATACCTC  258

Query  61   AAAACACAAAGTCACGTTCGTATCCCTCGTCTCTCCAGGAGGAGACGGATGTGGCGGGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  AAAACACAAAGTCACGTTCGTATCCCTCGTCTCTCCAGGAGGAGACGGATGTGGCGGGAA  318

Query  121  GA-AAAGAAGATGGAGATGATCAATCTAAAGCTTTACGTGGAGAATCAAAACATCATAAG  179
            || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  GAGAAA-AAGATGGAGATGATCAATCTAAAGCTTTACGTGGAGAATCAAAACATCATAAG  377

Query  180  AGAGAACGAGAAACTTAGGAAGAAAGCTCTTCTTCTTCACCAAGAAAACAAAGCTCTCTT  239
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct  378  AGAGAACGAGAAACTTAAGAAGAAAGCTCTTCTTCTTCACCAAGAAAACAAAACTCTCTT  437

Query  240  CTCTCTGCTTCAGACCAAAAAACTCTCCTCTGTTCCATAA  279
            ||||||||||||||||||||||||||||||||| ||||||
Sbjct  438  CTCTCTGCTTCAGACCAAAAAACTCTCCTCTGT-CCATAA  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5