BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322202
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor ... 1829 0.0
> AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor
9 | chr2:18745340-18747533 FORWARD LENGTH=1565
Length=1565
Score = 1829 bits (990), Expect = 0.0
Identities = 1207/1309 (92%), Gaps = 25/1309 (2%)
Strand=Plus/Plus
Query 5 AGATGCAGAGCCCTAAAATGGAGCAGGAGGAGGTTGAGGTGGAGAGGATGAGGAAGAAGT 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 144 AGATGCAGAGCCCTAAAATGGAGCAGGAGGAGGTTGAGGAGGAGAGGATGAGGAATAAGT 203
Query 65 GGCCGTGGATGAAGGCGGCGCAGTTAATGGAGTTTCGGATGCAAACTTTGGTGTACAGAT 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 204 GGCCGTGGATGAAGGCGGCGCAGTTAATGGAGTTTCGGATGCAAGCTTTGGTGTATAGAT 263
Query 125 ACATAGAGGCTGGTCTTCGTGTGCCTCCTCATCTTGTGGTGCCTATTTGGAACAGTCTTG 184
|||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 264 ACATAGAGGCTGGTCTCCGTGTGCCTCATCATCTCGTGGTGCCTATTTGGAACAGTCTTG 323
Query 185 CTCTCTCTTCCTCCTCAAATTATAACTATCACTCTTCTTCTCTGTTGAGTAACAAGGGAG 244
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 324 CTCTCTCTTCTTCCTCCAATTACAACTATCACTCTTCTTCTCTGTTGAGTAACAAGGGAG 383
Query 245 TAAATCATATCGACGCGGCGGAACCTGAACCCACAAGGTGCAGGAGAACAGATGGGAAGA 304
||| ||||||||| || |||| ||||||| || |||||||||||||||||||||||||
Sbjct 384 TAACCCATATCGACACGTTGGAAACTGAACCAACTAGGTGCAGGAGAACAGATGGGAAGA 443
Query 305 AATGGCGGTGTAGCAACACGGTCCTTCTATAT-GAGAAGTACTGTGAACGGCACATGCAT 363
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 444 AATGGCGCTGTAGCAACACGGTCCTTCTAT-TCGAGAAGTACTGTGAACGGCACATGCAT 502
Query 364 AGAGGCCGTAAACGTTCAAGAAAGCTTGTGGAATCTTCTTAC-GAGGTTGCTTCGTCGTC 422
||||| |||||||||||||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 503 AGAGGTCGTAAACGTTCAAGAAAGCTTGTGGAATCTTCTT-CTGAGGTTGCTTCATCATC 561
Query 423 AACCAAACACGACAACACTTATGGTTTGGACAGGAATAACGAGAGTCAGAGTGTTCTTCA 482
||||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 562 AACCAAATACGACAACACTTATGGTTTGGATAGGTATAACGAGAGTCAGAGTCATCTTCA 621
Query 483 TGGGACAATCTCGGGTTCTAGTAATGCGCAGGTAGTTACCATTGCTTCATTGCCTAGTGC 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 622 TGGGACAATCTCGGGTTCTAGTAATGCGCAGGTAGTTACCATTGCTTCACTGCCTAGTGC 681
Query 543 CAGAGCTTGTGATGATGTCATTCGTCCGTCTTTAGTGATCTCTGAATCCACAAACAAAAG 602
|||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 682 CAGATCCTGTGAAAATGTCATTCGTCCGTCTTTAGTGATCTCTGAATTCACAAACAAAAG 741
Query 603 TGTGAGTCACGGCTACAGGAGCAGAAGGAATATGGAGATAAGTTGTGATGACTTTATCAG 662
|||||||||||| | || | || ||| |||||||| |||| |||||||||||| |
Sbjct 742 TGTGAGTCACGG---C---AG-A-AA-GAACATGGAGATGAGTTATGATGACTTTATTAA 792
Query 663 T-ACAAAAGAGTCGAGTTTGTGTGTAAGAGTTGTTCCTCTTCAAGGTGATGAGAGCTTAC 721
| | ||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 793 TGA-AAAAGAGGCGAGTATGTGTGTTGGAGTTGTTCCTCTTCAAGGTGATGAGAGCAAAC 851
Query 722 CTTCTGTTCAAAAGTTCTTCCCCGAGGTATCTGATAATTCCTTAGAAGCTGCAAAGTTCT 781
|||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct 852 CTTCGGTTCAAAAGTTCTTCCCTGAGGTATCTGATAAATGCTTAGAAGCTGCAAAATTCT 911
Query 782 CAAGTAACCGGAAGAATGATATCATTGCAAGAAGCAGAGAATGGAAGAATATGAATGTTG 841
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 912 CAAGCAACAGGAAGAATGATATAATTGCAAGAAGCAGAGAATGGAAGAATATGAA---TG 968
Query 842 TTAATGGTGGCTTGTTTTC-TAGTATCCACTTTTCTCCAGATACTGTTCTTCAAGAACGT 900
|||||||||| ||| |||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 969 TTAATGGTGGTTTG-TTTCATGGTATCCACTTTTCTCCAGACACTGTTCTTCAAGAACGT 1027
Query 901 GGTGGGTTTCGTTTACAAAGAGTTGATACAGACAATGAACCAGGAAGGTGCCGAAGAACA 960
||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1028 GGTTGTTTTCGTTTACAAGGAGTTGAAACAGACAATGAACCAGGAAGGTGCCGAAGAACA 1087
Query 961 GATGGGAAGAAGTGGAGATGCAGCAAAGATGCTTTGTCTGGTCAGAAGTACTGCGATAAG 1020
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1088 GATGGGAAGAAGTGGAGATGCAGCAAAGATGTTTTGTCTGGTCAGAAGTACTGCGATAAG 1147
Query 1021 CACATGCATAGAGGTATCAAGAAGAAGCATCCAGTGGATACTACTAACTTACATGAGCGT 1080
||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
Sbjct 1148 CACATGCATAGAGGTATGAAGAAGAAGCATCCAGTTGATACTACTAACTCACATGAGAAT 1207
Query 1081 AGC-GGTTTTAGCCCGTTAACTGTGAAAACAGCTGCTAGATCTGT-GT-C-TTGCAAAGA 1136
|| || |||||||||||||| ||| ||||||||| |||||| || || | |||||||||
Sbjct 1208 -GCCGGGTTTAGCCCGTTAACCGTGGAAACAGCTGTTAGATCGGTTGTGCCTTGCAAAGA 1266
Query 1137 TGGAGATGACCAGAAGCTTTCTGTTTCAGTCATGGGAATTCCACTGCCCCGAGTTTCTGA 1196
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1267 TGGAGATGACCAGAAGCATTCTGTTTCAGTCATGGGAATTACACTGCCCCGAGTTTCTGA 1326
Query 1197 TGAGAAGAGCACTTGTAGTTACAGTACCGACACTACCATTACTGACACAGCTTTAAGGGG 1256
||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TGAGAAGAGCACTAGCAGTTGCAGTACCGACACTACCATTACTGACACAGCTTTAAGGGG 1386
Query 1257 TGAAGAAGACGATGAGGAGTACTTGTCTTTGTTTTCATCAGGTGTTTAG 1305
|||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1387 TGAAGACGACGATGAGGAGTACTTGTCTTTGTTTTCACCAGGTGTTTAG 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5