BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322224

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45695.1 | Symbols:  | Ubiquitin related modifier 1 | chr2:1...   344    2e-94


> AT2G45695.1 | Symbols:  | Ubiquitin related modifier 1 | chr2:18825993-18826879 
FORWARD LENGTH=491
Length=491

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 198/204 (97%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  1    ATGCAATTAACTCTTGAATTCGGGGGTGGGTTAGAGTTGCTCTGTGATTCTGAAAAGATC  60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  51   ATGCAATTAACTCTTGAATTCGGGGGTGGGTTAGAGCTGCTCTGTGATTCTGAAAAGATT  110

Query  61   CATAAAGTTAACGTTGATTTGCCCAATGGAGCTGAATCTGATGATTTCACTATGAAGCAT  120
            |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct  111  CATAAAGTAAACGTTGATTTGCCCAATGGAGCTGACTCTGATGATTTTACCATGAAGCAT  170

Query  121  TTGCTTTCATGGGTTCGTACAAATCTGATCAAAGAGAGACCTGAGATGTTCATGAAAGGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  171  TTGCTTTCATGGGTTCGTACAAATCTGATCAAAGAGAGACCTGAGATGTTCATGAAAGGA  230

Query  181  GATACTGTGAGACCTGGGGTTCTT  204
            ||||||||||||||||||||||||
Sbjct  231  GATACTGTGAGACCTGGGGTTCTT  254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5