BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322266

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46130.1 | Symbols: WRKY43, ATWRKY43 | WRKY DNA-binding prot...   479    8e-135


> AT2G46130.1 | Symbols: WRKY43, ATWRKY43 | WRKY DNA-binding protein 
43 | chr2:18957226-18957911 FORWARD LENGTH=600
Length=600

 Score =  479 bits (259),  Expect = 8e-135
 Identities = 284/296 (96%), Gaps = 2/296 (1%)
 Strand=Plus/Plus

Query  38   ATAAGAAGATGAAAAATCCGCGATTTGCGTTTCGCACAAAGAGTGATTCAGAT-TTACTT  96
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || 
Sbjct  57   ATAAGAAGATGAAAAATCCGCGATTTTCGTTTCGCACAAAGAGTGATGCAGATATT-CTC  115

Query  97   GATGATGGTTATCGATGGAGAAAGTACGGTCAGAAGTCCGTCAAGAACAGCTTGTATCCC  156
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  116  GATGATGGTTATCGATGGAGAAAGTACGGTCAGAAATCCGTCAAGAACAGCTTGTATCCC  175

Query  157  AGGAGCTATTATAGATGCACACAACACATGTGTAACGTGAAGAAGCAAGTTCAGAGGCTG  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  AGGAGCTATTATAGATGCACACAACACATGTGTAACGTGAAGAAGCAAGTTCAGAGGCTG  235

Query  217  TCGAAGGAGACGAACATGGTGGAGACAACTTATGAAGGAATCCATAACCATCCTTGTGAG  276
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  TCGAAGGAGACGAGCATTGTGGAGACAACTTATGAAGGAATCCATAACCATCCTTGTGAG  295

Query  277  GAGCACATGCAAACCCTAACACCTCTTCTTCATCAAATGCAGTTCCTGTCTAAGTT  332
            |||| ||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct  296  GAGCTCATGCAAACCCTAACTCCTCTTCTTCATCAATTGCAGTTCCTCTCTAAGTT  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5