BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322277

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46230.1 | Symbols:  | PIN domain-like family protein | chr2...   795    0.0   
  AT1G26530.1 | Symbols:  | PIN domain-like family protein | chr1...   401    3e-111


> AT2G46230.1 | Symbols:  | PIN domain-like family protein | chr2:18984199-18985959 
REVERSE LENGTH=960
Length=960

 Score =  795 bits (430),  Expect = 0.0
 Identities = 468/487 (96%), Gaps = 0/487 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAAGGGCAAAGAAAGCTCAAAAGTTTGCTGTCATCAAGAAGATTATTAGCCACAAA  60
            ||||||| |||||||||| ||||||||||||||||| | |||||||| ||||||||||||
Sbjct  110  ATGGGAAAGGCAAAGAAACCTCAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAA  169

Query  61   GCTTTGAAGCATTACAAGGAGGAGGTTTTGAATCCAAACAAGAAGGACCTCACGGAACTT  120
            |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct  170  GCTTTGAAGCATTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTT  229

Query  121  CCGAGAAACGTTCCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCGACATTGGTT  180
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  230  CCGAGAAACGTACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTT  289

Query  181  CCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGATC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  CCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGATC  349

Query  241  GATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACGGAC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  350  GATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACGGAT  409

Query  301  TGCGTCATGGCTGAGTTAGAGAAGTTAGGTCAGAAGTATCGTGTTGCTCTAAGGATTGCG  360
            || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  410  TGTGTCATGGCTGAGTTAGAGAAGTTAGGTCAGAAGTATCGTGTAGCTCTAAGGATTGCG  469

Query  361  AAAGATCCTCGTTTCGAAAGACTACCTTGTGTACACAAAGGAACATATGCTGATGACTGT  420
            ||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  470  AAAGATCCTCACTTCGAAAGACTACCTTGTATACACAAAGGGACATATGCTGATGACTGT  529

Query  421  CTCGTTGACAGAGTTACTCAGCATAAGTGCTTCATAGTGGCTACTTGTGATAGAGATTTA  480
            |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct  530  CTCGTTGACAGAGTTACTCAGCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTA  589

Query  481  AAGCGAA  487
            |||||||
Sbjct  590  AAGCGAA  596


> AT1G26530.1 | Symbols:  | PIN domain-like family protein | chr1:9165360-9167490 
FORWARD LENGTH=1259
Length=1259

 Score =  401 bits (217),  Expect = 3e-111
 Identities = 275/303 (91%), Gaps = 4/303 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAGGGCAAAGAAAGCTCAAAAGTTTGCTGTCATCAAGAAGATTATTAGCCACAAA  60
            ||||||||| |||||||| ||||||||||||| || || |||| ||| || |||||||||
Sbjct  531  ATGGGAAGGACAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAA  590

Query  61   GCTTTGAAGCATTACAAGGAGGAGGTTTTGAATCCAAACAAGAAGGACCTCACGGAACTT  120
            |||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  591  GCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTT  650

Query  121  CCGAGAAACGTTCCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCGACATTGGTT  180
            |||||||||||||| ||||||||| ||||||||||||||||| ||||||| |  ||||||
Sbjct  651  CCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGGTT  710

Query  181  CCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGATC  240
            ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| 
Sbjct  711  CCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGATT  770

Query  241  GATCTTGAGAAGGGAATGA-GAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACGGA  299
            ||||||||||||||||||| | |  ||| |||||||||| |||||||||||||| |||||
Sbjct  771  GATCTTGAGAAGGGAATGATG-G--TGTTTGTACGCAAAATGCACTCCTTGTATTACGGA  827

Query  300  CTG  302
            |||
Sbjct  828  CTG  830



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5