BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322284
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46290.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1535 0.0
AT2G46280.1 | Symbols: TRIP-1, TIF3I1 | TGF-beta receptor inter... 1406 0.0
AT5G57650.1 | Symbols: | eukaryotic translation initiation fac... 100 2e-20
> AT2G46290.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:19005771-19007879 REVERSE LENGTH=1289
Length=1289
Score = 1535 bits (831), Expect = 0.0
Identities = 999/1080 (93%), Gaps = 12/1080 (1%)
Strand=Plus/Plus
Query 1 ATGACAATGGATTACGTTAATCCCGAAGGTCTTCGATTAGATGATCGCCAAATGCGAAGC 60
|||||||| || | |||||||||||||||||||||||| | | ||||||| ||||
Sbjct 83 ATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATT-CA--A---CCAAATGAAAAGC 136
Query 61 TCTTCGCATCAAACCCTAGAAACGAGGATGAGGCCGATCTTGATGAAGGGACACGAACGT 120
|| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 137 TCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTGATGAAGGGACATGAACGT 196
Query 121 CCATTGACATTCCTCAGGTACAACAGAGATGGCGATCTGCTTTTCTCCTGCGCCAAGGAC 180
|||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 197 CCATTGACGTTCCTGAGGTACAACAGAAATGGTGATCTGCTTTTCTCCTGCGCCAAAGAC 256
Query 181 CACACTCCCACCCTCTGGCTTGCCCATAACGGCGAGCGCCTTGGAACTTACCGTGGCCAC 240
||||||||||| ||||| ||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 257 CACACTCCCACAGTCTGGTTTGCCGATAACGGCGAGCGTCTTGGCACTTACCGTGGCCAC 316
Query 241 AATGGTGCTGTTTCGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 300
| ||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 317 AGTGGTGCTGTTTGGTGCTGTGATATCTCCAGAGACTCGTCTAGATTGATCACTGGTAGT 376
Query 301 GCTGATCAGACTGCAAAGCTCTGGGATGTAAAATCTGGAAAACAATTATTCACATTCAAT 360
|||||||||||||||||||| |||||||| |||||||| ||| |||| ||||| |||||
Sbjct 377 GCTGATCAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCACTTTCAAG 436
Query 361 TTTGGTTCTTCGGCGAGGTCTGTGGATTTCTCTGTTGGAGATCATCTTGCAGTGATTACC 420
|||||| | | || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 437 TTTGGTGCCCCTGCAAGGTCTGTGGATTTCTCTGTTGGTGATCATCTTGCAGTGATTACC 496
Query 421 ACTGATCACTTCATGGGAGTTTCCTCTGCTATTCATGTGAAACGCATTGCGGAAGATCCC 480
|||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 497 ACTGATCACTTCGTGGGAACTTCCTCTGCTATTCATGTCAAACGCATTGCAGAAGATCCC 556
Query 481 CAAGACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGATC 540
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 557 GAAGACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGATGGAAAGAAGAAGATC 616
Query 541 AATAGAGCTGTTTGGGGTCCTCTGAACCAAACTATTGTTAGTGGTGGTGAAGATACTGTT 600
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |
Sbjct 617 AATAGAGCTGTTTGGGGTCCCCTGAACCAAACCATTGTTAGTGGTGGTGAAGATGCTGCT 676
Query 601 ATCAGAATCTGGGATACCGAGACTGGAAAATTGCTCAAGCAATCAGATGTGGAAGTGGGT 660
||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 677 ATCAGAATCTGGGATGCAGAGACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGT 736
Query 661 CACAAGGAGGCCATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGT 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 737 CACAAGGAGGCCATTACATCCCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGT 796
Query 721 TCACATGACAAAACTGCAAAGGCATGTCTTTGGGATATGAGATCGCTGACTCTTATTAAG 780
||||||||||||||||| || | | |||||||| |||||| |||||||||||||||||
Sbjct 797 TCACATGACAAAACTGC-AA---A-G-CTTTGGGACATGAGAACGCTGACTCTTATTAAG 850
Query 781 AGTTATACAACAGTGGTGCCTGTAAATGCTGTTGCCATGTCTCCACTTCTCAACCATGTT 840
| ||| || || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 851 ACTTACACCACTGTGGTGCCTGTAAATGCTGTCGCCATGTCTCCACTTCTCAACCATGTT 910
Query 841 GTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGAAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGAAG 970
Query 901 TTTGAAGCTAAGTTTTACGACACGATTCTGGAAGAGGAAATAGGTGGTGTGAAAGGTCAT 960
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 971 TTTGAAGCTAAGTTTTACGACACGATTCTGCAAGAGGAAATTGGTGGCGTGAAAGGTCAT 1030
Query 961 TTTGGACCTATAAATGCGTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAGGT 1020
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1031 TTTGGACCTATTAATGCTTTGGCATTCAGTCCTGATGGGAAGAGTTTCTCTAGTGGAGGT 1090
Query 1021 GAAGACGGCTACGTGAGGCTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTTAG 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 GAAGACGGCTACGTGAGACTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTTAG 1150
> AT2G46280.1 | Symbols: TRIP-1, TIF3I1 | TGF-beta receptor interacting
protein 1 | chr2:19003426-19005536 REVERSE LENGTH=1360
Length=1360
Score = 1406 bits (761), Expect = 0.0
Identities = 938/1023 (92%), Gaps = 14/1023 (1%)
Strand=Plus/Plus
Query 63 TTCGCATCAAACCCT-AGAAAC-GAGGATGAGGCCGATCTTGATGAAGGGACACGAACGT 120
||||||||||||||| |||||| || ||||||||||||| ||||||||||||| ||||||
Sbjct 117 TTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGGACATGAACGT 176
Query 121 CCATTGACATTCCTCAGGTACAACAGAGATGGCGATCTGCTTTTCTCCTGCGCCAAGGAC 180
|||||||| || || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 177 CCATTGACGTTTCTGAGGTACAACAGAGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGAC 236
Query 181 CACACTCCCACCCTCTGGCTTGCCCATAACGGCGAGCGCCTTGGAACTTACCGTGGCCAC 240
||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 237 CACACACCCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGAACTTACCGTGGTCAC 296
Query 241 AATGGTGCTGTTTCGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 300
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AACGGTGCTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 356
Query 301 GCTGATCAGACTGCAAAGCTCTGGGATGTAAAATCTGGAAAACAATTATTCACATTCAAT 360
|||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||
Sbjct 357 GCTGATCAGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAG 416
Query 361 TTTGGTTCTTCGGCGAGGTCTGTGGATTTCTCTGTTGGAGATCATCTTGCAGTGATTACC 420
||| | | | ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 417 TTTAATGCCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCGTCTTGCAGTGATTACC 476
Query 421 ACTGATCACTTCATGGGA--GTTTCCTCTGCTATTCATGTGAAACGCATTGCGGAAGATC 478
|||||||||||| ||| | || || |||||||||||||||| || |||||||||||||
Sbjct 477 ACTGATCACTTCGTGG-ACCGTA-CCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATC 534
Query 479 CCCAAGACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGA 538
| | || |||| || ||| ||||||||||||||||| ||||||| |||||||||| ||
Sbjct 535 CTGAGGAACAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA 594
Query 539 TCAATAGAGCTGTTTGGGGTCCTCTGAACCAAACTATTGTTAGTGGTGGTGAAGATACTG 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 595 TCAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAG 654
Query 599 TTATCAGAATCTGGGATACCGAGACTGGAAAATTGCTCAAGCAATCAGATGTGGAAGTGG 658
||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 655 TTATCAGAATCTGGGATGCCGAGACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGG 714
Query 659 GTCACAAGGAGGCCATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAG 718
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GTCACAAGAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAG 774
Query 719 GTTCACATGACAAAACTGCAAAGGCATGTCTTTGGGATATGAGATCGCTGACTCTTATTA 778
|||||| |||||||||||||||| | | | | |||| |||||| ||||||||||| |||
Sbjct 775 GTTCACTTGACAAAACTGCAAAG-C-T-T-T--GGGACATGAGAACGCTGACTCTTCTTA 828
Query 779 AGAGTTATACAACAGTGGTGCCTGTAAATGCTGT-TGCCATGTCTCCACTTCTCAACCAT 837
||| ||| || || |||||||| ||||||||||| | || ||||||||||||||||||||
Sbjct 829 AGACTTACACCACTGTGGTGCCCGTAAATGCTGTCTCCC-TGTCTCCACTTCTCAACCAT 887
Query 838 GTTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGG 897
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGA 947
Query 898 AAGTTTGAAGCTAAGTTTTACGACACGATTCTGGAAGAGGAAATAGGTGGTGTGAAAGGT 957
||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 948 AAGTTTGAAGCTAAGTTTTACGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGT 1007
Query 958 CATTTTGGACCTATAAATGCGTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGA 1017
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGA 1067
Query 1018 GGTGAAGACGGCTACGTGAGGCTGCATCATTTTGACTCCAATTACTTCAACATCAAGATT 1077
||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1068 GGTGAAGACGGTTACGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATT 1127
Query 1078 TAG 1080
|||
Sbjct 1128 TAG 1130
> AT5G57650.1 | Symbols: | eukaryotic translation initiation factor-related
| chr5:23345797-23346285 REVERSE LENGTH=147
Length=147
Score = 100 bits (54), Expect = 2e-20
Identities = 79/90 (88%), Gaps = 5/90 (6%)
Strand=Plus/Plus
Query 393 TGTTGGAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGGA--GTTTCCTCTGCT 450
||||| |||||||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 57 TGTTGAAGATCATCTTGCAGTGATTACCACTGATCACTTCATGG-ACCGTATGG-CTGCT 114
Query 451 ATTCATGT-GAAACGCATTGCGGAAGATCC 479
|||||||| ||| || ||||||||||||||
Sbjct 115 ATTCATGTTGAAGCGTATTGCGGAAGATCC 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5