BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322297
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase ... 2488 0.0
AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 63.9 5e-09
> AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase
2 | chr2:19076405-19078386 REVERSE LENGTH=1587
Length=1587
Score = 2488 bits (1347), Expect = 0.0
Identities = 1520/1602 (95%), Gaps = 18/1602 (1%)
Strand=Plus/Plus
Query 1 ATGACTGATGCTTGTTGTTTGAAGGGAAACGAGGACAAAATGGTTCCTGGTTTTGGTCAT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGACTGATGCTTGTTGTTTGAAGGGAAACGAGGACAAAATGGTTCCTCGTTTTGGTCAT 60
Query 61 GGAACCTGGATTGGAAAAGGATCAAATGCATTGAATGATACACCAGAGATGTTGCATGAA 120
|||||||||| | |||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GGAACCTGGA-T-----AGGA--AAA-GCATTTAATGATACACCAGAGATGTTGCATGAA 111
Query 121 AGGAG-CGTGAGACAGGAAAAAAGATTGGAAAGGGCTAATGAGCTGATGAATGATGATAC 179
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AGGAGTC-TGAGACAGGAAAAAAGATTGGAAAGGGCTAATGAGCTGATGAATGATGATAG 170
Query 180 TATTCAAAAGTTTGAGAAGGCAGCCATGGCACGTTCCAGATCTGTCGATTCTGCACCACT 239
| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCTGCAAAAGCTTGAGACGGCAGCCATGGCACGTTCCAGATCTGTCGATTCTGCACCACT 230
Query 240 AGGAAACTACACCATTTGGAAAAATGAATACCGGAGGGGCAAGAATTTTGAAGATATGTT 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 231 AGGAAACTACACCATTTGGAAAAATGAATACCGGAGGGGCAAGAGTTTTGAAGATATGTT 290
Query 300 ACGTCTGATGCAAGATCAAATCATTATGGCAAGAGTTTACAGTGGTCTTGCAAAGATGAC 359
|||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||| | ||
Sbjct 291 ACGTTTGATGCAAGATCAAATCATCATGGCACGAGTTTACAGTGGACTTGCAAAGTTTAC 350
Query 360 CAACAATCTCGCCTTGCACGAAGAAATAGAAACACAACTAATGAAACTAGCATGGGAGGG 419
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 351 AAACAATCTCGCCTTGCACCAAGAGATAGAAACACAACTAATGAAACTAGCTTGGGAGGA 410
Query 420 AGAATCTACTGATATTGATCAGCAGCAGAGCAGAGTTCTTGATAGTATAAGAGACATGGG 479
|||||||||||||||||||||| ||| || ||||| ||||| |||||||||||||||||
Sbjct 411 AGAATCTACTGATATTGATCAGGAGC--AG-AGAGTACTTGACAGTATAAGAGACATGGG 467
Query 480 ACAAATACTGGCTAGAGCACACGAGCAGCTATATGAATGCAAGTTGGTGACAAATAAGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 ACAAATACTGGCTAGAGCACACGAGCAGCTATATGAATGCAAGTTGGTGACAAATAAGTT 527
Query 540 GAGAGCAATGCTACAAACAGCTGAAGAAGAACTCGAAAAC-ACGCAGACTTATATAACGT 598
|||||||||||||||||||| |||||| |||||||||||| | |||||||||||||||||
Sbjct 528 GAGAGCAATGCTACAAACAGTTGAAGATGAACTCGAAAACGA-GCAGACTTATATAACGT 586
Query 599 TCTTGACTCAGCTAGCTTCCAAGGCACTACCAGATGCTATCCACTGCTTGACCATGCGCC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TCTTGACTCAGCTAGCTTCCAAGGCACTACCAGATGCTATCCACTGCTTGACCATGCGCT 646
Query 659 TGACTCTAGAGTATTATCTCCTGCCTTTACCAATGAGGAATTTTCCTAGAAGGGAGAATT 718
||| |||||||||| |||||||||||||||| ||||| |||||||| || ||||||||||
Sbjct 647 TGAATCTAGAGTATCATCTCCTGCCTTTACCGATGAGAAATTTTCCAAGGAGGGAGAATT 706
Query 719 TGGAGAATCCAAAACTTTACCACTACGCTCTTTTCTCTGATAATGTATTGGCAGCATCAG 778
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 707 TGGAGAATCCAAAACTTTACCACTACGCTCTCTTCTCTGATAATGTACTGGCTGCATCAG 766
Query 779 TTGTTGTCAATTCGACAGTCATGAATGCAAAGGATCCTTCAAGGCATGTTTTCCACCTTG 838
|||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 767 TTGTTGTCAACTCCACAGTCATGAATGCACAGGATCCTTCAAGGCATGTTTTCCACCTTG 826
Query 839 TGACTGATAAGCTCAATTTTGGAGCAATGAGTATGTGGTTTCTGTTGAACCCTCCTGGAG 898
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TGACTGATAAGCTCAACTTTGGAGCAATGAGTATGTGGTTTCTGTTGAACCCTCCTGGAG 886
Query 899 ACGCCACCATCCATGTCCAAAGGTTTGAAGATTTTACTTGGCTCAACTCATCTTACTCTC 958
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AAGCGACCATCCATGTCCAAAGGTTTGAAGATTTTACTTGGCTCAACTCATCTTACTCTC 946
Query 959 CAGTTTTGAGACAGCTCGAGTCAGCAGCTATGAAGAAGTTCTATTTTAAAACAGCGAGAT 1018
|||||||||| |||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 947 CAGTTTTGAGTCAGCTCGAGTCAGCAGCTATGAAGAAGTTCTACTTCAAGACAGCGAGGT 1006
Query 1019 CTGAATCAGTTGAATCAGGCTCAGAAAACCTCAAGTACCGGTACCCGAAATACATGTCAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CTGAATCAGTTGAATCAGGCTCAGAAAACCTCAAGTACCGGTACCCGAAATACATGTCAA 1066
Query 1079 TGCTTAATCACTTGAGGTTCTACATCCCGAGGATCTTCCCAAAGTTAGAGAAAATCTTGT 1138
||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1067 TGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCCAAAGTTGGAGAAAATCTTGT 1126
Query 1139 TTCTTGACGATGATGTGGTTGTTCAGAAGGATTTAACTCCACTGTGGTCCATAGATCTTA 1198
|| ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 1127 TTGTTGACGATGATGTGGTTGTTCAGAAGGATTTAACTCCCCTATGGTCCATTGATCTTA 1186
Query 1199 AAGGGAAAGTGAATGACAACTTTGATTCGAAGTTCTGCGGATGGGCTTATGGGATGAACA 1258
|||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1187 AAGGGAAAGTGAATGAAAACTTTGATCCCAAGTTCTGCGGATGGGCTTATGGGATGAACA 1246
Query 1259 TCTTCGACCTGAAAGAGTGGAAGAAGAACAACATTACAGAAACTTATCACTTTTGGCAAA 1318
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TCTTCGACCTGAAAGAATGGAAGAAGAACAACATTACAGAAACTTATCACTTTTGGCAAA 1306
Query 1319 ACCTGAACGAAAACCGGACTCTATGGAAACTTGGAACATTGCCACCAGGGCTCATAACGT 1378
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1307 ACCTGAACGAAAACCGGACTCTATGGAAACTAGGAACATTGCCACCAGGGCTCATAACGT 1366
Query 1379 TCTACAATCTGACTCAGCCACTTCAGAGCAAATGGCACTTACTTGGATTGGGTTATGATA 1438
||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1367 TCTACAATCTGACACAACCACTTCAGAGAAAATGGCACTTACTTGGACTGGGTTATGATA 1426
Query 1439 AAGGAATCGATG-CAAAGAAGATTGAAAGATCAGCTGTTATACATTACAATGGACACATG 1497
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AAGGAATCGATGTCAA-GAAGATTGAAAGATCAGCTGTTATACATTACAATGGACACATG 1485
Query 1498 AAACCATGGACAGAGATGGGGATAAGCAAGTATCAGCCATATTGGACAAAGTACATCAAT 1557
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1486 AAACCATGGACAGAGATGGGGATAAGCAAGTATCAGCCATATTGGACGAAGTACACCAAT 1545
Query 1558 TTTGACCATCCTTACATCTTTACTTGCAGGCTGTTTGAGTGA 1599
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TTTGACCATCCTTACATCTTTACTTGCAGGCTGTTTGAGTGA 1587
> AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein,
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420
68 kDa protein {Cicer arietinum}
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279
Score = 63.9 bits (34), Expect = 5e-09
Identities = 37/38 (97%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 1176 TCCACTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 1213
||| ||||||||||||||||||||||||||||||||||
Sbjct 1971 TCC-CTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78965457285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5