BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322350
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2230 0.0
> AT2G47010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G17030.1);
Has 72 Blast hits to 72 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317126-19319329
FORWARD LENGTH=1938
Length=1938
Score = 2230 bits (1207), Expect = 0.0
Identities = 1393/1484 (94%), Gaps = 8/1484 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCAATTGGCTCCAATCGTGGCCGTGATTAACTTGCTTCTCCTGGTTTATGGAGAC 60
||||||||| ||||||||||| |||||||| | |||||| | ||||||||| ||||||||
Sbjct 380 ATGAAGCAACTGGCTCCAATCTTGGCCGTGGTAAACTTGATCCTCCTGGTTCATGGAGAC 439
Query 61 GATG-GATCAGCGGTTGGAGATCCTGGGATGAAGAGAGACGGTCTCAGAGTGGCGTTTGA 119
|| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 440 GA-GAGATCAGCGGTTGGAGATCCTGGGATGAAGAGAGACGGTCTCAGAGTGGCATTTGA 498
Query 120 AGCTTGGAACTTTTGCAATGAGGTTGGCTTCGAAGCTCCTCACATGGGTAGTCCTCGAGC 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AGCTTGGAACTTCTGCAATGAGGTTGGCTTCGAAGCTCCTCACATGGGTAGTCCTCGAGC 558
Query 180 CGCTGACTGCTTCGATGTGTCATCTAAATGCATCAAAGCATACAGAAAAAACCAGTCAAA 239
|| || ||||||||| ||||||||||||||||||||||||||| | || |||| |||||
Sbjct 559 TGCAGATTGCTTCGATTTGTCATCTAAATGCATCAAAGCATACACAGAAGACCAATCAAA 618
Query 240 CAACACAAAAATTGGTTATTCCTTGATGCACAAGGTATCTGACTCGGATAACGAGCTAGG 299
||| || | | ||| | ||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 619 CAAAACCACCAGTGGATCTTCCTTGGTGCACAAGGTATCAGACTCGGATAATGAGCTAGG 678
Query 300 GATCGGAAAGCCTAAACCAGGAATCATATCAGAATCAGCATTGCATAACCCTGACCTTTA 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GATTGGAAAGCCTAAACCAGGAATCATATCAGAATCAGCATTGCATAACCCTGACCTTTA 738
Query 360 CGCGGTCGAGAAAGAACTCTATCTAGGCTCTCTCTGTCAAGTCTCAGACAAACCAAACCC 419
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 739 CGCGGTCGAGAAAGAACTCTACCTAGGCTCCCTCTGTCAAGTCTCAGACAAACCAAACCC 798
Query 420 GTGGAGTTTCTGGATGGTAATGCTCAAAAATGGAAACTACGACACAAAATCTGGTCTTTG 479
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 799 ATGGAGTTTCTGGATGGTCATGCTCAAAAATGGAAACTACGACACAAAATCTGCTCTTTG 858
Query 480 CCCTAAAAACGGCaaaaaaaTCCCACCTTTCAATCAACCCGGATTATTCCCCTGTTTCGG 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CCCTAAAAACGGCAAAAAGATCCCACCTTTCAATCAACCCGGATTATTCCCCTGTTTCGG 918
Query 540 CAGCGGTTGTATGAACCAACCGACGCTGAACCACGGAAAGACCGAGCTTCTGAGAGATGG 599
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 919 CAGCGGTTGTATGAACCAACCGACGCTGAACCACGGAAAAACCGAGCTTCAGAGAGATGG 978
Query 600 TCAGACCATGAAGGGATGGTTCAATGGTACGTACGATC-TGGATGCAGAATTGGGAAATG 658
||| |||||||||||||||||||||||||||||||| | || ||||| || |||||||
Sbjct 979 TCAAACCATGAAGGGATGGTTCAATGGTACGTACGAGCAAGG-GGCAGATTTTGGAAATG 1037
Query 659 GGTTTAATGGGATAAGTTATTACGAGGTTGTTTGGGAGAAGAGAGTTGGTGTTGGTGGTT 718
|||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1038 GGTTGGATGGGATAAGTTATTACGAGGTTGTGTGGGAGAAGAGAGTAGGCGTTGGTGGTT 1097
Query 719 GGGTATTTAAACATAAGCTTAAGACTTCAGCTAAGTACCCATGGCTTATGCTTTACCTCA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1098 GGGTATTTAAACATAAGCTTAAGACTTCAGCTAAGTACCCATGGCTTATGCTTTACCTTA 1157
Query 779 GAGCTGATGCCACTAAAGGATTCTCTGGTGGATACCATTATGACACTAGAGGAATGCTCA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GAGCTGATGCCACTAAAGGATTCTCTGGTGGATACCATTATGACACTAGAGGAATGCTCA 1217
Query 839 AAACACTTCCGGAGTCACCAAACTTCAAAGTGAGACTGACACTAAACATAAAACAAGGAG 898
||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1218 AAACACTTCCGGAGTCACCAAACTTTAAAGTGAGACTAACACTAAATGTAAAACAAGGAG 1277
Query 899 GAGGA-CCTAAGAGTCAATTCTATCTTCTCGACATCGGAAGCTGCTGGAAGAACAACGGC 957
| ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1278 GCGGAGCC-AAGAGTCAATTCTATCTTCTCGACATCGGAAGCTGCTGGAAAAACAACGGC 1336
Query 958 GAGCCCTGCGACGGTGACGTAACCACCGACGTAACTCGTTACTCGGAGATGATCATAAAC 1017
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1337 AAGCCCTGCGACGGTGACGTAACCACCGACGTTACTCGTTACTCGGAGATGATCATAAAC 1396
Query 1018 CCTGAAACTGCACTTTGGTGTAACCCAAAGAGTCTCCACAACTGTCCACCGTACCACACG 1077
|||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1397 CCTGAAACCCCACTTTGGTGCAACCCCAAGAGTCTTCACAACTGTCCACCGTACCACACG 1456
Query 1078 TTTCGAAACGGCACCAGAGTTCACCGTACGGACACACTG-AGTTTTCCTTACGAGGCTTA 1136
||||| ||||||||||||||||||||||||||| ||| | || || ||||||||||||||
Sbjct 1457 TTTCGGAACGGCACCAGAGTTCACCGTACGGAC-CACCGGAGCTTCCCTTACGAGGCTTA 1515
Query 1137 CCATGTTTACTGTGCACCGGGAAACGGCGAGCATCCAGAGCTTCCGGTGGGGACTTGTGA 1196
||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1516 CCACGTTTACTGTGCGCCGGGAAACGCCGAGCATCTTGAGCTTCCGGTGGGGACTTGTGA 1575
Query 1197 TGCTTTTAGTAACCCACAAGCTCAGGAGATTCTTCAGCTTTTGCCTCACCCAGTTTGGGG 1256
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1576 TGCTTATAGTAACCCACAAGCTCAGGAGATTCTTCAGCTTTTGCCTCACCCGGTTTGGGG 1635
Query 1257 TGAATATGGGTATCCGACCCGGTTGGGTGATGGTTGGGTGGGTGACCCGAGAACTTGGGA 1316
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 TGAATATGGATATCCTACCCGGTTGGGTGATGGTTGGGTGGGTGACCCGAGAACTTGGGA 1695
Query 1317 GCTTGATGTTGGTGGCTTGTCTAGTAGGCTTTACTTCTACCAGGATCCCGGTACGATTCC 1376
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1696 TCTTGATGTTGGTGGCTTGTCCAGTAGGCTTTTCTTCTACCAGGATCCCGGTACGATTCC 1755
Query 1377 GGCGAGGAGGATTTGGACATCGGTTGATGTTGGTACGGAGATTTACAAAGAAGATGACGC 1436
||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||
Sbjct 1756 AGCGAGGAGGATTTGGACATCGGTGGATGTTGGCACCGAGATTTATAAAGAAGATGAAGC 1815
Query 1437 AATTGCAGAATGGGATCTCTCTGATTTCGATGTTCTTATTACTT 1480
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 AATTGCAGAATGGGATCTCTCTGATTTCGATGTTCTTATTACTT 1859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5