BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322358
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47090.1 | Symbols: | zinc ion binding;nucleic acid binding... 1858 0.0
AT3G62240.1 | Symbols: | RING/U-box superfamily protein | chr3... 222 1e-56
> AT2G47090.1 | Symbols: | zinc ion binding;nucleic acid binding
| chr2:19341306-19344310 REVERSE LENGTH=2452
Length=2452
Score = 1858 bits (1006), Expect = 0.0
Identities = 1103/1149 (96%), Gaps = 9/1149 (1%)
Strand=Plus/Plus
Query 1060 GCAAACCAAGGCCAATCAAGATTTGGGCATAACTCGGAGAGTTTACTTAGTAACACCACG 1119
|||||||||||||||||||||||||| || || || ||||||||| ||||||||||||||
Sbjct 1175 GCAAACCAAGGCCAATCAAGATTTGGACAGAATTCAGAGAGTTTAGTTAGTAACACCACG 1234
Query 1120 ACTACTCGTCTAAGACATCAAACAAATAGAAGTGCAACTTCTGGTTCTTCTCGAGCTTGG 1179
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1235 ACTACTCGTCAAAGACATCAAACAAATAGAAGTGCAACTTCTGGTTCTTCTCAAGCTTGG 1294
Query 1180 CCAGCGCTAAACCGAGGTCCGACAGAAACATCAATCACAAGCAGTGTACAATCTTCTGGT 1239
||||| ||||||||||| ||| |||||| |||||| |||||||| |||||||||||||||
Sbjct 1295 CCAGCACTAAACCGAGGCCCGGCAGAAATATCAATTACAAGCAGGGTACAATCTTCTGGT 1354
Query 1240 GCTTCTGCTCAATCTCAATCTGGGCACCATGGTAGAGTTGAAATTACTAGAACTCTTGCT 1299
||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 1355 GCTTCTGCTCAATCTCAATCTAGGCACCATGACAGAGTTGAAAGTACTAGAACTCTTGCT 1414
Query 1300 TCTGCAGTTCCACAGGATGCTCGTAATGAACATACCACAGTTGGTGGATGCTCATCTGGT 1359
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 1415 TCTGCAGTTCCACAAGATGCTC-----G----TACCACAGTTGGTGGATGCTCATCTGGT 1465
Query 1360 TCTTCTCTGAGTTCCTCCAATGCAACAAAGAGGAATAATCATCACTCGTCTTCAACCCCT 1419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 TCTTCTCTGAGTTCCGCCAATGCAACAAAGAGGAATAATCATCACTCGTCTTCAACCCCT 1525
Query 1420 AAAATGTCTGAAACAAGATCACTGGAGCAGCCTTCTCATTCTGATTCTCCTCCAATTTCC 1479
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1526 AAAATGTCTGAAACAAGATCACTGGCGCAGCCTTCTCATTCTGATTCTCCTCAAATTTCC 1585
Query 1480 GCTGTGAAAAATCGCAGGTCATCATCCACCAGTGCAAGTGCAGCGAACATCCAAGTAGCA 1539
||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 1586 GCTGTGAAAAATCGCAGGTCATCATCCACCAGTGCAAATGCAGGGAACATTCAAGTAGCG 1645
Query 1540 CAAGGTGTTTCTGATGTACAGTCTGACAATAAAAGTTTGGTTGAAAAAATACATGCCAGC 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 CAAGGTGTTTCTGATGTACAGTCTGACAATAAAAGTTTGGTTGAAAAAATACATGCCAGC 1705
Query 1600 CTTGGACACGATGAAGAGTTATTCATGGCCTTCAAGAATACATCTGGAAAGTATCGTCAT 1659
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1706 CTTGGACACGATGAAGAGTTATTCATGGCCTTCAAGAATACATCAGGAAAGTATCGTCAT 1765
Query 1660 GGTTCCATCGATGCAAGAACTTACTTGGAATATGTGAAAGGTTATGGTTTGTCTCACTTA 1719
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 GGTTCCATCGATGCCAGAACTTACTTGGAATATGTGAAAGGTTATGGTTTGTCTCACTTA 1825
Query 1720 GTTCTAGACATGGCTAGACTCTGCCCTGACCCTCAGAGGCAGAAGGAACTCATTGATACC 1779
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1826 GTTCTGGATATGGCTAGACTCTGCCCGGACCCTCAGAGGCAGAAGGAACTCATTGATACC 1885
Query 1780 CACAATGCCTGCTTGAAAGGAGGAAATAAAGGGAAAGCTGTGAAGGTTGAAAGTAGCAGT 1839
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 CACAACGCCTGCTTGAAAGGAGGAAATAAAGGGAAAGCTGTGAAGGTTGAAAGTAGCAGT 1945
Query 1840 GACTCCAAGGGGGATAGATTTGTTGATACAGTGAGGAAGTTACAATTCTCTGACAAATCT 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 GACTCCAAGGGGGATAGATTTGTTGATACAGTGAGGAAGTTACAATTCTCTGACAAATCT 2005
Query 1900 CAGGACAAAGACAAAGACAAGGATGCATACCGTTCAGATAAAGGCAAAACAAAAGTGACG 1959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 CAGGACAAAGACAAAGATAAGGATGCATACCGTTCAGATAAAGGCAAAACAAAAGTGACG 2065
Query 1960 ACGTTGGTGAATTCTTCATCGGCTGGAGTGGGATTAGGTGACACAGGCAAGCAACCTAAG 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 ACGTTGGTGAATTCTTCATCGGCTGGAGTGGGATTAGGTGACACAGGCAAGCAACCTAAG 2125
Query 2020 AAAACTTCAAAGTTTCTCAGAACACGTCTAGGAGAGAAATCAATGGCTGCAGGACTAGAT 2079
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2126 AAAACTTCAAAGTTTCTCAGAACACGTCTAGGAGAGAAATCAATGGCTGCAGTACTAGAT 2185
Query 2080 CTTAGGAATTCTAACCCAGAGCCTGAAGCAGAACCTAAGAACGATAACTCCAAAAGGAGC 2139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2186 CTTAGGAATTCTAACCCAGAGCCTGAACCAGAACCTAAGAACGATAACTCCAAAAGGAGC 2245
Query 2140 CAGAACTCTCTCGGTGGATTGCCACTTCGTGGTGCTTGGAGGAGAGGAAGTGCAAAACTC 2199
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2246 CAGAACTCTCCCGGTGGATTGCCACTTCGTGGTGCTTGGAAGAGAGGAAGTGCAAAACTC 2305
Query 2200 TTCCTCTAG 2208
||| |||||
Sbjct 2306 TTCGTCTAG 2314
Score = 1738 bits (941), Expect = 0.0
Identities = 1092/1161 (94%), Gaps = 25/1161 (2%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTTGCGCCGTTTGCGCGGAGAATCTCGAATGGGTTGGTTACGGATCTTGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 ATGGATGATAGTTGCGCCGTTTGCGCGGAGAATCTCGAATGGGTTGGTTACGGATCTTGT 73
Query 61 GGTCACAGAGAGGTTTGCTCTACTTGTGTCGTTCGTCTTCGTTTCATACTCAATGATCGT 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 74 GGTCACAGAGAGGTTTGCTCTACTTGCGTTGTTCGTCTTCGTTTCATACTCAATGATCGT 133
Query 121 CGATGTTGTATCTGCAAAACCGAATGCCCCGTCGTCTTCGTCACAAAGGCTTTGGGTGAT 180
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 134 CGATGCTGTATCTGCAAAACCGAATGCCCCGTCGTCTTTGTCACAAAGGCTTTGGGTGAT 193
Query 181 TATACAAAGACGATTAGTGATTTCTCCACTACTTTTCCATCAGTACCAAAGGAAGGTCGA 240
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 194 TATACAAAGACGATTAGTGATTTCTCGACTACTTTCCCATCAGTACCAAAGGAAGGTCGA 253
Query 241 GTAGGATCTTTCTGGTATCATGAAGAAACCAATGTTTTCTTTGATGACTTGAACCATTAC 300
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 254 GTAGGATCCTTCTGGTATCATGAAGAAACCAATGTTTACTTTGATGACTTGAACCATTAC 313
Query 301 ACAAGGATTAAGGCAATGTGCAGACTCTCTTGCAATTCGTGTAACGAGACAAACAAGAGT 360
||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||| |
Sbjct 314 ACAAGGATTAAAGCAATGTGCAGGCTCTCTTGCAATTTGTGTAACGATACAAACAAGACT 373
Query 361 C-ATCCAAAGAAAGGGCCTAACCATTGT-TTGCGGTTTAAGAGCGTTGAACACTTGAAAG 418
| | |||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 374 CGA-CCAAAGAAAGAGCCTAACCATTGTGTT-CGGTTTAAGAGCGTTGAACACTTGAAAG 431
Query 419 ATCATTTAAGCCATCAGCACAAATTGCATATGTGCAGTTTATGTCTTGTAGGTCGTAAGG 478
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 ATCATTTAAATCATCAGCACAAATTGCATATGTGCAGTTTATGTCTTGTAGGTCGTAAGG 491
Query 479 TTTTTATTTGTGAACAAAAGTTGTTTACTAAGGCACAGCTGAACCAACATATAAGTAGTG 538
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 492 TTTTCATTTGTGAACAAAAGTTGTTTACTAAGGGACAGCTGAACCAACATATAAGTAGTG 551
Query 539 GTGACTCGGAAGTGGATGGAAGTGAGAGTGAAAGAGGAGGTTTCACTGGTCATCCTATGT 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GTGACTCGGAAGTTGATGGAAGTGAGAGTGAAAGAGGAGGTTTCACTGGTCATCCTATGT 611
Query 599 GTGAGTTCTGTAAAAGACCATTCTATGGGGATAATGAGCTATACACTCATATGTCTAGAG 658
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 612 GTGAGTTCTGTAAAAGACCATTCTATGGTGATAATGAGCTATACACTCATATGTCTAGAG 671
Query 659 AGCACTACACTTGTCATATATGCCAAAGGCTGAAGCCTGGACAATATGAATATTATGGAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGCACTACACTTGTCATATATGCCAAAGGCTGAAGCCTGGACAATATGAATATTATGGAA 731
Query 719 ACTATGATGATCTGGAGGTTCATTTCAGAAGTGACCATTTCCTATGTGAAGACGAAACCT 778
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 732 ACTATGATGATCTTGAGGTTCATTTCCGAAGTGACCATTTCCTATGTGAAGACGAAACCT 791
Query 779 GCCTTGCTAAGAAGTTCATAGTTTTCCAAATCGAAGCTGAGTTAAAAAGGCATAATTCTA 838
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 792 GCCTTGCTAAGAAGTTCATAGTTTTCCAAATCGAAGCTGAGCTAAAAAGGCATAATGCTA 851
Query 839 TTGATCATGGAGGTAGAATGTCTCGGTCTCAACAAA---C--CA-----G-T-------- 879
|||| ||||||||||||||||||||||||||||||| | || | |
Sbjct 852 TTGACCATGGAGGTAGAATGTCTCGGTCTCAACAAAATGCATCACTACAGATACAAGCCA 911
Query 880 -TT-CCAATACCAGAGCAGTCGTCGTGGAAGACGCCGATCATCTCTTCGTGAGCCTAATC 937
|| |||||||| || |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 912 GTTTCCAATACCCGAACAGTCGCCGTGGAAGACGCCGATCTTCTCTTCGTGAGCCTAATC 971
Query 938 TTGCGGTTCTGGAATCTCAAGCATCTTATGCCATTAACGACGGTAATAATCTTCTTCAAC 997
||| | |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 972 TTGTGCTTCTGGAATCTCAAGCATCTTATGCCTTTAACGACGATAATAATCTTCCTCAAC 1031
Query 998 ATGTGGGGCGCTATGGAGGTTCACGTCTTGGAGAATCTTCTTTTCCTCCACTCTCTGTGC 1057
||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ATGTGGGACGCTCTGGAAATTCACGTCTTGGAGAATCTTCTTTTCCTCCACTCTCTGTGC 1091
Query 1058 CAGCAAACCAAGGCCAATCAAGATTTGGGCATAACTCGGAGAGTTTACTTAGTAACACCA 1117
||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||||
Sbjct 1092 AAGCAAACCAAGGCCAATCAAGATTTGGACAGAACTCAGAGAGTTTAGTTAGTAACACCA 1151
Query 1118 CGACTACTCGTCTAAGACATC 1138
|||||||||||| ||||||||
Sbjct 1152 CGACTACTCGTCAAAGACATC 1172
> AT3G62240.1 | Symbols: | RING/U-box superfamily protein | chr3:23033442-23036765
REVERSE LENGTH=2701
Length=2701
Score = 222 bits (120), Expect = 1e-56
Identities = 317/408 (78%), Gaps = 29/408 (7%)
Strand=Plus/Plus
Query 1401 TCACTCGTCTTCAACCCCTAAAATGTCTGAAACAAGATCACTGGAGCAGCCTTCTCATTC 1460
|||||| || ||| ||||||| | ||||| ||||||||||| ||||||||||||||
Sbjct 1678 TCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGATCACT---TCAGCCTTCTCATTC 1734
Query 1461 TGATTCTCCTCCAATTTC--C-GC---TGTGAAAAATCGCAGGTCATCATCCACCAGTGC 1514
|||| ||||||| |||| | || |||| ||||||| | ||||||| |||| | |
Sbjct 1735 AGATTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGTAAAACATCATCAACCACTAC 1794
Query 1515 AAGTGCAGCGAACATCCAAGTAGCACAAGGTGTTTCTGATGTACAGTCTGACAATAAAAG 1574
| ||| || | | ||| | | ||| | | |||||||| |||| | | | |||
Sbjct 1795 -A---CAGGGATCGT-CAAACA-CTCAACCCCCTCCAGATGTACAATCTG-CCA-ACAAG 1846
Query 1575 T--TTGGTTGAAAAAATAC-ATGCCAGC-CTTGGACACGATGAAGAGT-TATTCATGGCC 1629
| ||| |||| ||||| | || | || ||||| || |||||||| | ||||| |||||
Sbjct 1847 TCATTGATTGAGAAAATGCGAT--CTGCACTTGGTCATGATGAAGA-TGTATTCGTGGCC 1903
Query 1630 TTCAAGAATACATCTGGAAAGTATCGTCATGGTTCCATCGATGC-AAGAACTTACTTGGA 1688
|||| ||||| ||| ||| |||||||||| |||||||| ||||| ||| ||||| |||||
Sbjct 1904 TTCAGGAATATATCAGGACAGTATCGTCAAGGTTCCATTGATGCAAAG-ACTTATTTGGA 1962
Query 1689 ATATGTGAAAGGTTATGGTTTGTCTCACTTAGTTCTAGA-CATGGCTAGACTCTGCCCTG 1747
|||||| |||||||||| ||||||||||| ||| | || | | |||||||| || ||||
Sbjct 1963 GTATGTGCAAGGTTATGGATTGTCTCACTTGGTTATTGATC-TTGCTAGACTGTGTCCTG 2021
Query 1748 ACCCTCAGAGGCAGAAGGAACTCATTGATACCCACAATGCCTGCTTGA 1795
||||| |||||||||||||||||||||||||||| |||||| | ||||
Sbjct 2022 ACCCTAAGAGGCAGAAGGAACTCATTGATACCCATAATGCCAGTTTGA 2069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109537589190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5