BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322360
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1068 0.0
> AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G10660.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:19344668-19346921 REVERSE LENGTH=1668
Length=1668
Score = 1068 bits (578), Expect = 0.0
Identities = 801/906 (88%), Gaps = 25/906 (3%)
Strand=Plus/Plus
Query 1 ATGGTATTGATCGTTTACTGGTATGACTTCATCTGCTTTGCCACAGTAGCGGCTGCAATC 60
|||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 58 ATGGCATTGATCGTTTATTGGTATGACTTCATCTGCTTTGCGATAGTTGCGGCTGCAATC 117
Query 61 GTCGCGTCCCTGTGGTTTCTATTGCGCAGAGAAAGAGGCTGCTTAGGAATTGATGATACG 120
||| ||||| |||||||||||| |||||||| ||||||||| ||| |||||||||||||
Sbjct 118 GTCACGTCCTTGTGGTTTCTATCCCGCAGAGACAGAGGCTGCGTAGTAATTGATGATACG 177
Query 121 GGCCACGTTAGCTTGCTACCACTTTATAGATCGAAGAGCCTTGGGTCGGCTCAGTTATGG 180
||||| ||||||| ||||||||||||||||||| | || ||| ||||||| |||||||
Sbjct 178 TCCCACGATAGCTTGTTACCACTTTATAGATCGAACAACCGTGGTTCGGCTCGGTTATGG 237
Query 181 ACCAGTTGCTGGACAAGGTTACATCCCGGCTGGCTACTCTTCACTCGTTCCACCTCTTTT 240
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GCCAGTTGCTGGACAAGATTACATCCCGGCTGGCTACTCTTTACTCGTTCCACCTCTTTT 297
Query 241 CTCTCCATGGCTGCATTATTGGCTTGGGATATCTTGAAGTGGGACGCAAGCATCTTCGTC 300
|||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 298 CTCTCCATGGCTGCTTTATTGGCTTGGGATGTCATCAAGTGGGACGCAAGCATCTTCGTC 357
Query 301 TATTACACAGAATGGACCTTCATGCTTGTGATCATCTACTTTGCGATGGGTATTGCAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 358 TATTACACAGAATGGACCTTCATGCTTGTGATCATCTACTTTGCGATGGGTATTGTAGCT 417
Query 361 TCAGTATATGGTTGCTTGATACATTCT-AAGGAGCTAGCA-TTGGAAACTGGTGAAGATG 418
|||||||||||||| |||||||||| | ||||||||| || || ||||||| ||||||||
Sbjct 418 TCAGTATATGGTTGTTTGATACATT-TAAAGGAGCTAACACTT-GAAACTGATGAAGATG 475
Query 419 TGGTTGTAGAAAAGGTCGGAGATGAGTTCCGGCAAAGATTAGAGGTTTATGGTTGTTTCA 478
|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 476 TGGTAGTAGAAAAGGTCGGAGATGAGTTCCGGCGAAGATTAGAGGTTTGTGGTTGTTTCA 535
Query 479 TGCAGACAATTTTTCAGACAAGTGCAGGAGCTGTAGTGCTGACGGACATTGTGTTTTGGT 538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 TGCAGACAATTTTTCAGACAAGTGCAGGGGCTGTAGTGCTGACGGACATTGTGTTTTGGT 595
Query 539 TAGTTATAGTTCCTTTCCTCTCGAATACTCGCTTCGGGTTAAACAAGTTGATGATTTGCA 598
||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| ||||
Sbjct 596 TAGTTATAGTTCCTTTCCTATCGACTACTCGCTTTGGGTTAAACACGTTGACGATCTGCA 655
Query 599 TGCACACGGCAAACGCAGGCTTCCTCCTGCTCGAAACGGTCCTCAATAGCCTTAAATTCT 658
||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 656 TGCACACGGCAAATGCAGGCTTCCTCCTGCTTGAAACACTCCTCAATAGCCTTCCATTCC 715
Query 659 TTTG-TT-C---TG--AT-TT-CA-GCCGTTCCCTTGGTTTCGAATGGGATATTTCG-TG 707
||| || | || || || | || | ||| | || | || ||||| | ||
Sbjct 716 CTTGGTTTCGAATGGGATATTTCGTGCTATGGAGTTG-TCTCTA-TGTTATATTCCAATG 773
Query 708 C-T-ATGGA-GT-TGTCTCTATATTATCTTGGTGGCCATATCCGTTCCTCGAGCTCGATA 763
| || | | ||| || | | |||||||||||||||||||||||||||| || |
Sbjct 774 GATCATCCACGCATGTGGCT-TC--A-CTTGGTGGCCATATCCGTTCCTCGAGCTAGACA 829
Query 764 AGCCATGGGCTCCGATATGGTACTTAAGCATGGCAATTGTTCACATCCCTTGCTATGGAG 823
||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 830 AGCCATGGGCTCCGATATGGTACCTATGCATGGCAATTGTTCATATCCCTTGCTATGGAG 889
Query 824 CTTATGCCGCAGTTGTAAAAGCCAAGAACTCATGCTTCCCATATCTATTCCCAAATGCTT 883
||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 890 CTTATGCCGCAATAGTAAAAGCCAAGAACTCCTGTTTCCCATATCTATTCCCAAATGCTC 949
Query 884 TTGTAA 889
||||||
Sbjct 950 TTGTAA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5