BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322367
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47200.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 399 5e-111
> AT2G47200.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:19377729-19378331 REVERSE LENGTH=603
Length=603
Score = 399 bits (216), Expect = 5e-111
Identities = 246/261 (94%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGATAGTGATGCTCCTTAGAGCACTGATGAGTTGCCGTCTTACGCCTAAAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGCGTCGATAGTGATGCTCCTTAGAGCACTGATGAGTTGCCGTCTTACGCCTAAAGAC 241
Query 61 GAGCCGGATACAGCAGATTCTTCTTCGTCGGCGGTGAAAATTTACAGAAATATCGTCGGA 120
|||||||| ||| | |||||||||||||| || | |||| ||||||||||||||||||||
Sbjct 242 GAGCCGGAGACATCGGATTCTTCTTCGTCTGCTGCGAAACTTTACAGAAATATCGTCGGA 301
Query 121 GACGAAAACATGACGAGGAAGAGAATTTCAGTGGTTGATACATCGCATCGTGGCGATAAT 180
||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 302 GACGAAAACGTGACAAGGAAGAGAATTTCAGTGGTTGATACATCGCATCTTGGCGATAAT 361
Query 181 CACGAGTTTATCATCGAAACTACGTGTGGGAGCAACGATATGGACGAAGGGTTTTACTGG 240
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 362 CACGAGTTTATTATCGAAACTACGTGTGGAAGCAACGATATGGATGAAGGGTTTTACTGG 421
Query 241 ATTATCGTCAGGAACCACTTG 261
|| ||||||||||| ||||||
Sbjct 422 ATCATCGTCAGGAATCACTTG 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5