BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322371
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47240.1 | Symbols: CER8, LACS1 | AMP-dependent synthetase a... 2377 0.0
> AT2G47240.1 | Symbols: CER8, LACS1 | AMP-dependent synthetase
and ligase family protein | chr2:19392558-19397831 FORWARD
LENGTH=2407
Length=2407
Score = 2377 bits (1287), Expect = 0.0
Identities = 1765/1997 (88%), Gaps = 28/1997 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTGTTTCGCGGCAAAGGTGGAAGAAGGAGTTAAAGGGGA-AGATGGAAAGCCATC 59
||||||| ||| ||||| ||||| ||||| ||||||||| || | ||| |||||||| ||
Sbjct 210 ATGAAGTCTTTTGCGGCTAAGGTAGAAGAGGGAGTTAAA-GGAATAGACGGAAAGCCGTC 268
Query 60 GGTAGGCCCGGTGTACCGGAATCTTTTGTCGGAGAAAGGTTTTCCTCCTCGA--GATTCT 117
|||||| |||||||||||||||||| ||||||| |||||||||||| | ||| ||||||
Sbjct 269 GGTAGGTCCGGTGTACCGGAATCTTCTGTCGGAAAAAGGTTTTCCT-C-CGATTGATTCT 326
Query 118 GATATCACCACTACTTGGGACATTTTCAGTAAATCTGTGGAGAAATTTCCTGATAACAAG 177
|| ||||||||| |||||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 327 GAGATCACCACTGCTTGGGACATTTTCAGTAAATCAGTGGAGAAATTCCCTGACAATAAT 386
Query 178 ATGCTTGGATGGCGTCAAATTGTGGATGAGAAGGTTGGACCGTATATGTGGAAAACGTAC 237
|||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 387 ATGCTTGGATGGCGTCGAATTGTTGATGAGAAGGTTGGACCATATATGTGGAAAACGTAC 446
Query 238 AAGGATA-TATACGAAGAAGTTCT-CTTGATCGGTTCTGCACTACGAGCCGTCGGAGCTG 295
||||| | |||||||||||||| | | ||| || |||||||||||||||| ||||||||
Sbjct 447 AAGGA-AGTATACGAAGAAGTTTTGC-AGATTGGCTCTGCACTACGAGCCGCCGGAGCTG 504
Query 296 AACCTGGGTCTCGAGTGGGGATCTATGGAGCTAATTGTCCTCAGTGGATCATAGCAATGG 355
|||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 505 AACCTGGGAGTCGAGTGGGGATCTACGGTGTTAATTGTCCTCAGTGGATCATAGCAATGG 564
Query 356 AGGCTTGTGCAGCTCACACTCTAATATGTGTACCTCTATATGATACATTGGGTTCAGGAG 415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 565 AGGCTTGTGCAGCTCACACTCTAATCTGTGTACCTCTATATGATACATTGGGTTCAGGAG 624
Query 416 CAGTCGATTATATCGTTGATCACGCGGAAATCGATTTTGTGTTCGTCCA-GAACACCAAA 474
|||||||||| || || || || ||||||||||| |||||||| ||||| || |||||||
Sbjct 625 CAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCAAGA-CACCAAA 683
Query 475 ATTAGAGGACTTCTTGAGCCAGATTGCAAAGGTGCAAAACGTCTAAAAGCTATAGTTTCT 534
|||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 684 ATTAAAGGACTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGCTATAGTTTCC 743
Query 535 TTCACTAATGTGGGCGAAGAACAGAGCTACAAGGCTTTAGAAATTGGAGTCAAAGCATAC 594
|||||||| ||| |||| || | ||| ||||||||| |||||||||||||||| |||||
Sbjct 744 TTCACTAACGTGAGCGACGAGCTTAGCCACAAGGCTTCAGAAATTGGAGTCAAAACATAC 803
Query 595 TCGTGGCTCGATTTTCTCCATATGGGACAAGAGAAGCCGAAAGAGACAAACCCGCCTAAA 654
|| ||| ||||||||||||||||||||| ||||| ||| |||| || |||||||||||
Sbjct 804 TCCTGGATCGATTTTCTCCATATGGGACGTGAGAAACCGGAAGACACGAACCCGCCTAAG 863
Query 655 CCGTCTGACGTGTGCACCATAATGTACACGAGCGGCACAAGCGGTGAACCTAAAGGTGTG 714
||| | || | ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 864 GCGTTTAACATATGCACCATAATGTACACCAGCGGCACAAGCGGTGATCCTAAAGGTGTG 923
Query 715 CTTTTGACCCACGAAGCGGCCGCGACTTGCGTCATTGGGGTGGATCTCTGCT-TGGACCA 773
||||||| ||| |||||| |||||||| || ||||| ||||||||| | |||||||
Sbjct 924 GTTTTGACTCACCAAGCGGTCGCGACTTTTGTTGTTGGGATGGATCTCTA-TATGGACCA 982
Query 774 GTTCGAGGACAAGATGACACATGAAGATGTGTATCTCTCGTTTCT-GCCGTTGGCTCATA 832
||| || || |||||||||||||| |||||||||||||| || || ||| ||||||||||
Sbjct 983 GTTTGAAGATAAGATGACACATGATGATGTGTATCTCTCCTT-CTTGCCCTTGGCTCATA 1041
Query 833 TCCTCGACCGTGCAAATGAGGAATATTTCTTCCGTAAAGGCGCTTCCGTTGGCTATTACC 892
| || |||||| || |||||||| ||||| || |||||||||||||| ||||||||||
Sbjct 1042 TTCTTGACCGTATGAACGAGGAATACTTCTTTCGCAAAGGCGCTTCCGTCGGCTATTACC 1101
Query 893 ATGGAGATTTGAATGCGTTACACGATGATATTCAAGAACTGAAACCGACTTTTCTTGCGG 952
||||| ||||||| | ||||| || ||||||||||||||||||||||||| ||| || |
Sbjct 1102 ATGGAAATTTGAACGTGTTACGTGACGATATTCAAGAACTGAAACCGACTTATCTAGCTG 1161
Query 953 GAGTTCCAAGAGTCTTCGAGAGGATTTATGATGGGATTCAGAAAG-CTCTTCAGGAGCTT 1011
|||| |||||||| || ||||| || |||| |||||||| |||| ||||||| || |||
Sbjct 1162 GAGTACCAAGAGTGTTTGAGAGAATCCATGAGGGGATTCA-AAAGGCTCTTCAAGAACTT 1220
Query 1012 AACCCAAGAAGAAGACTCATCTTCTATGCTCTCTATAAATACAAACTTGCGTGGATGAAT 1071
||||||||||| ||| |||||||| |||||||||| ||| |||| ||||||||| |||||
Sbjct 1221 AACCCAAGAAGGAGATTCATCTTCAATGCTCTCTACAAACACAAGCTTGCGTGGTTGAAT 1280
Query 1072 CGTGGATATTCTCACAGCAAAGCTTCACCCATGGCTGACTTCATAGCTTTCAAAAAGATT 1131
||||| || ||||| || |||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 1281 CGTGGGTACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAGATT 1340
Query 1132 AAAAACCAATTAGGAGGTAGAATTCGGTTGCTAGTATCTGGAGGAGCACCACTGAGTCTT 1191
| | || |||| |||||| | || |||||||||||||||||||||||||| |||| | |
Sbjct 1341 AGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTATCTGGAGGAGCACCTTTGAGCCCT 1400
Query 1192 GAGATCGAAGAGTTCTTGAGAGTTACTTCTTGTTGCTTCGTCGTTCAAGGCTATGGTCTA 1251
||||| |||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1401 GAGATTGAAGAGTTTTTGAGAGTTACTTGTTGTTGCTTTGTCGTTCAAGGCTACGGTCTA 1460
Query 1252 ACGGAGACGCTTGGAGGAACAACTTTGGGTTACCCGGACGAGATGTGTATGCTCGGGACG 1311
|||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 1461 ACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGTGTATGCTAGGGACA 1520
Query 1312 GTCGGTGTTCCAGCGGTTTACAATGAGATACGGCTTGAGGAGGT-TCCGGAAATGGAG-T 1369
|||||| |||||||||||||||| |||||||||||||| ||||| || | |||||| | |
Sbjct 1521 GTCGGTATTCCAGCGGTTTACAACGAGATACGGCTTGAAGAGGTGTCTG-AAATGG-GCT 1578
Query 1370 ATGACCCATTGGGAGAAAATCCGGCAGGGGAGATCTGTATAAGAGGA-ATATGTCTGTTT 1428
||||||| | ||||||||||||||||| |||||||||||||||||| | |||| |||||
Sbjct 1579 ATGACCCGCTCGGAGAAAATCCGGCAGGAGAGATCTGTATAAGAGGACA-ATGTATGTTT 1637
Query 1429 TCTGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATGAAAGACGGATGGTTCCAT 1488
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1638 TCAGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATGAAAGATGGATGGTTCCAC 1697
Query 1489 ACAGGAGACATAGGTGAGATTCTTCCAAACGGATTACTTAAGATCATCGATCGTAAGAAG 1548
|||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 1698 ACAGGAGATATAGGTGAGATTCTTCCAAACGGAGTACTCAAGATCATCGATCGTAAAAAG 1757
Query 1549 AACCTGATCAAACTCTCTCAAGGAGAATATGTTGCTCTTGAACATTTGGAAAGCATCTAC 1608
|| ||||||||||| ||||||||||||||||||||||| || |||||||||| ||||| |
Sbjct 1758 AATCTGATCAAACTTTCTCAAGGAGAATATGTTGCTCTCGAGCATTTGGAAAACATCTTC 1817
Query 1609 GGACAAAACCCTATTGTCCAAGATATATGGGTTTATGGAGACAGCTTCAAATCTATGCTT 1668
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 GGGCAAAACTCTGTTGTCCAAGATATATGGGTTTATGGAGACAGCTTCAAATCTATGCTT 1877
Query 1669 GTGGCGGTGATTGTTCCCAATCCAGAAACCCTAAACCGGTGGGCTAAAGATCTCGGTTTT 1728
|| |||||| |||||||||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct 1878 GTCGCGGTGGTTGTTCCCAACCCAGAAACCGTCAACAGGTGGGCTAAAGATCTCGGTTTT 1937
Query 1729 ACTAAACCACTCGAAGAACTCTGTTCTTTCCCGGAGCTTAAAGAACACATCATTTCAGAA 1788
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1938 ACTAAACCATTCGAAGAACTCTGTTCTTTCCCGGAACTAAAAGAACACATCATTTCAGAA 1997
Query 1789 CTGAAGTCCACGGCAGAGAAGAGCAAGCTAAGCAGGTTTGAGTACATAAAAGCTGTGACG 1848
||||||||||||||||| |||| ||||||||| | |||||||||||| ||||| |||||
Sbjct 1998 CTGAAGTCCACGGCAGAAAAGAACAAGCTAAGAAAGTTTGAGTACATCAAAGCGGTGACA 2057
Query 1849 GTGGAGACAAAACCTTTTGATGTAGAGAGAGACTTGGTGACTGCGAC-CTTGAAAAATAG 1907
||||||||||||||||| || |||||||||||||| ||||||||||| || || ||| |
Sbjct 2058 GTGGAGACAAAACCTTTCGACGTAGAGAGAGACTTAGTGACTGCGACGCTC-AAGAATCG 2116
Query 1908 GAGGACCAATCTTCTCAAGTATTATCAGGTATCAA-TCGACGAAATGTACCGAAAATTGG 1966
||||| |||||||||||| ||||||||||| ||| |||||||||||||||| |||||||
Sbjct 2117 GAGGAACAATCTTCTCAAATATTATCAGGTG-CAAATCGACGAAATGTACCGCAAATTGG 2175
Query 1967 CGGCAAAGAGAAGCTGA 1983
| |||||| || ||||
Sbjct 2176 CCTCAAAGAAAATCTGA 2192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98242466565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5