BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322424
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47830.1 | Symbols: | Cation efflux family protein | chr2:1... 1960 0.0
> AT2G47830.1 | Symbols: | Cation efflux family protein | chr2:19590863-19594014
REVERSE LENGTH=1688
Length=1688
Score = 1960 bits (1061), Expect = 0.0
Identities = 1175/1228 (96%), Gaps = 15/1228 (1%)
Strand=Plus/Plus
Query 162 GCCTGGAGAAGAAGGGGAGAAGATTTTCCGGCTAGGTCTCACCGCAGATATAGGTTTATC 221
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 245 GCCTGGAGAAGAAGGGGAGAAGATATTCCGGCTAGGTCTCACCGCAGATATAGGTTTATC 304
Query 222 TGTCGCAAAAGCTCTCACCGGCTATCTCTGCGGCAGCACCGCCATTATAGCCGACGCTGC 281
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 305 TGTCGCAAAAGCTCTCACCGGTTATCTCTGCGGCAGCACCGCCATTATCGCCGATGCTGC 364
Query 282 TCATTCCGTTTCCGATGTGGTTCTAAGTGGAGTTGCTCTAGTGTCTTACAGAGCTGCAAA 341
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 365 TCATTCCGTTTCCGATGTGGTTCTAAGTGGTGTTGCTCTAGTGTCTTACAGAGCTGCAAA 424
Query 342 TGTTCCCAAGGACAAAGAACATCCATATGGTCATGGTAAATTTGAAACACTTGGAGCCCT 401
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 425 TGTTCCCAAGGACAAAGAACATCCTTATGGTCATGGTAAATTTGAAACGCTTGGAGCACT 484
Query 402 TGGCATCTCTGCCATGCTTTTGGCTACTGGCTCTGGTATTGCCTGGCATGCTTTAGACCT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGGCATCTCTGCCATGCTTTTGGCTACTGGCTCTGGTATTGCCTGGCATGCTTTAGACCT 544
Query 462 TTTATCTATTGCCCTGTCCGCAGCTCCTGAGGTCCTTCATCATCACGGTGGACATCATCA 521
|||||||||||| |||||||||||||||||||| | |||| | |||||||||||||
Sbjct 545 TTTATCTATTGCACTGTCCGCAGCTCCTGAGGT-AAT--TCAT-A--GTGGACATCATCA 598
Query 522 CGGAATTGATATGAATCATCCCATTCTCGCTTTGACTGTTACTATTGCTTCCATTTCTGT 581
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 CGGCATTGATATGAATCATCCCATTCTCGCTTTGACTGTTACTATTGCTTCCATTTCTAT 658
Query 582 CAAAGAAGGGCTTTATTGGATCACAAAACGAGCTGGAGAAAAACAAGGGAGTGGATTGAT 641
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 659 CAAAGAAGGGCTTTATTGGATCACAAAACGAGCAGGTGAAAAACAAGGGAGTGGTTTGAT 718
Query 642 GATGGCAAATGCTTGGCATCATCGATCAGATGCTATTTCTTCTGTAGTTGCACTTGTTGG 701
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 GATGGCAAATGCTTGGCATCATCGATCAGATGCTATTTCTTCTCTAGTTGCACTTGTTGG 778
Query 702 AGTTGGAGGTTCTATGCTCGGAGTTAACTTTTTAGATCCTCTAGCTGGCCTCGTTGTCTC 761
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 779 AGTTGGAGGTTCTATTCTCGGAGTTAATTTTTTAGATCCTCTAGCTGGCCTTGTTGTCTC 838
Query 762 GACAATGATTTTCAATGCCGGACTGAAAACAGGACACCAAAGTATCTTGGAACTCGTGGA 821
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GACAATGATTGTCAATGCCGGACTGAAAACAGGACACCAAAGTATCTTGGAACTCGTGGA 898
Query 822 TGCTGCTATACCAGCTCAGCAATTAGAGCCAATAAGACAAACCATATTACAGGTTGAAGG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGCTGCTATACCAGCTCAGCAATTAGAGCCAATAAGACAAACCATATTACAGGTTGAAGG 958
Query 882 AGTCAAGGGATGTCATCGGCTAAGGGGTAGGAGAGCTGGTTCATCGTTGTATCTTGATGT 941
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGTGAAGGGATGTCATCGGCTAAGGGGTAGGAGAGCTGGTTCATCGTTGTATCTTGATGT 1018
Query 942 ACACATTGTGGTAGATCCTTTTTCCAGTGTGAGTGTTGCCCATGAGGTAGGAGAATATGT 1001
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1019 ACACATTGTGGTAGATCCTTTTTCCAGTGTGAGTGTCGCACATGAGGTAGGAGAATATGT 1078
Query 1002 ACGGAGACAGATTAATATGAACCATCCTGAAGTGTCCGAAGTTTTTATTCATATAGATCC 1061
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACGGAGACAGATTAATTTGAACCATCCTGAAGTGTCCGAAGTTTTTATTCATATAGATCC 1138
Query 1062 AGCCTTTTTACAGTTTTCTTGTAGCACGATGGATCATGACAGTATAACGAAAAGTAATCA 1121
||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 1139 AGCCTTTTTACAGTTTTCTTGTAGCACCAAGGATCATGACAGTATAACGAA--G------ 1190
Query 1122 AGAAAGTAACATCTGCCAAGAGATTAAACATGTTGAAGCCACTGTCTCAGACATTTTTTC 1181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 -GAAAGTAACATCTGCCAAGAGATTAAACATGTTGAAGCCACTGTCTCAGACATTTTTTC 1249
Query 1182 GTCACAGTTATCTGAGAAAATGACGATCAAACGAATTACAACCCACTTGCTGCATAGCAA 1241
||| ||||| ||||||||| |||||||||||||||||||| |||||||| | ||||||||
Sbjct 1250 GTCGCAGTTGTCTGAGAAATTGACGATCAAACGAATTACACCCCACTTGTTACATAGCAA 1309
Query 1242 GATCTTGCTCCAAATCGTAGTCGCCATGCCATCGACCATGACAATACAGGACGTCATGAG 1301
||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 1310 GATCTTGCTCCAAATCGTAGTCGCCATGCCATCAACCATGTCCATACAGGACGTCATGAT 1369
Query 1302 AGCCGCTGAACATGCAGAGAAAGAGATTCTGAAGGCAGCCCCAAATGTGGCTCGTGTCAG 1361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AGCTGCTGAACATGCAGAGAAAGAGATTCTGAAGGCAGCCCCAAATGTGGCTCGTGTCAG 1429
Query 1362 CATTCAGCTTAGTCTTAACTCCGAATAA 1389
||||||||||||||||||||||||||||
Sbjct 1430 CATTCAGCTTAGTCTTAACTCCGAATAA 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5