BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322431
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47900.3 | Symbols: TLP3 | tubby like protein 3 | chr2:19610... 1973 0.0
> AT2G47900.3 | Symbols: TLP3 | tubby like protein 3 | chr2:19610923-19613232
REVERSE LENGTH=1963
Length=1963
Score = 1973 bits (1068), Expect = 0.0
Identities = 1174/1226 (96%), Gaps = 4/1226 (0%)
Strand=Plus/Plus
Query 1 ATGTCCTTCAAGAGTCTCATTCAAGACATGAGAGGAGAGCTTGGGAGTATTTCTAGAAAG 60
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 467 ATGTCCTTCAAGAGTCTCATTCAGGACATGAGAGGAGAGCTTGGGAGTATATCCAGAAAG 526
Query 61 GGATTCGATGTCAGATTCGGCTATGGTAGATCCAGGTCTCAACGTGTTGTTCAGGATACT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 527 GGATTCGATGTCAGATTCGGGTATGGTAGATCCAGGTCTCAACGTGTTGTTCAGGATACT 586
Query 121 TCTGTTCCTGTTGATGCTTTCAAGCAGAGCTGCTGGGCTAACATGCCTCCGGAGCTCCTC 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 587 TCTGTTCCTGTTGATGCTTTCAAGCAGAGCTGCTGGGCTAGTATGCCTCCGGAGCTCCTG 646
Query 181 AGGGATGTTCTGATGAGGATTGAGCTATCCGAAGACACTTGGCCCTCTA-GAAAGAATGT 239
|| |||||||| ||||||||||||| |||||||||||||||||| |||| |||| |||||
Sbjct 647 AGAGATGTTCTTATGAGGATTGAGCAATCCGAAGACACTTGGCCGTCTAGGAAA-AATGT 705
Query 240 TGTTTCTTGCGCTGGTGTCTGCAGGAACTGGCGTGAGATCGTCAAGGAGATTGTCAAAGT 299
||||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||
Sbjct 706 TGTTTCTTGCGCTGGTGTCTGCAGGAACTGGCGAGAAATCGTCAAAGAGATCGTCAGAGT 765
Query 300 TCCTGAGGTTTCTAGCAAATTGACTTTTCCTATCTCCCTGAAACAGCCGGGTCCAAGGGG 359
||||||| ||||||||||| | ||||||||||||||||| |||||||||||||| || ||
Sbjct 766 TCCTGAGCTTTCTAGCAAACTCACTTTTCCTATCTCCCTCAAACAGCCGGGTCCTAGAGG 825
Query 360 ATCACTTGTTCAGTGCTATATTATGAGAAACCGCAGCAATCAAACCTACTACCTGTACCT 419
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 826 ATCACTTGTTCAATGCTATATTATGAGAAACCGCAGCAATCAAACCTACTATCTATACCT 885
Query 420 CGGGTTAAACCAAGCAGCAGCTTCAAATGATGATGGAAAGTTCCTTCTTGCTGCCAAGAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 CGGGTTAAACCAAGCAGCAGCTTCAAATGATGATGGAAAGTTCCTTCTTGCTGCCAAGAG 945
Query 480 GTTTCGCAGGCCAACTTGCACTGACTACATCATCTCCTTAAACTGCGATGATGTCTC-CA 538
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 946 GTTTCGGAGGCCAACTTGCACTGACTACATCATCTCCTTAAACTGCGATGATGTCTCTC- 1004
Query 539 GAGGAAGCAATACCTATATCGGAAAGCTAAGATCTAACTTTCTGGGGACCAAGTTCACTG 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1005 GAGGAAGCAATACCTATATCGGAAAGCTTAGATCTAACTTTCTGGGGACCAAGTTCACTG 1064
Query 599 TCTATGACGCTCAGCCGACGAATCCTGGAACTCAGGTTACCAGAACCCGTTCAAGCAGAC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TCTATGACGCTCAGCCGACGAATCCTGGAACTCAGGTTACCAGAACCCGTTCAAGCAGAC 1124
Query 659 TTCTCAGTCTGAAACAAGTGAGCCCAAGAATTCCATCTGGCAACTATCCTGTAGCACACA 718
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1125 TTCTCAGTTTGAAACAAGTGAGCCCGAGAATTCCATCTGGCAACTATCCTGTAGCACATA 1184
Query 719 TCTCATATGAGCTTAACGTCTTGGGTTCCAGAGGACCGAGGAGGATGCAGTGTGTCATGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCTCATATGAGCTTAACGTCTTGGGTTCCAGAGGACCGAGGAGGATGCAGTGTGTCATGG 1244
Query 779 ATGCCATCCCTGCATCAGCTGTTGAACCTGGAGGAACAGCTCCAACTCAGACGGAACTTA 838
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1245 ATGCCATCCCTGCATCAGCTGTAGAACCTGGAGGAACAGCTCCAACTCAGACGGAACTTG 1304
Query 839 TCCACAGCAATCTTGATAATTTCCCGTCTTTCTCCTTCTTCAGGTCGAAATCAATTCGTG 898
|||| ||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 1305 TCCATAGCAATCTTGATAGTTTCCCCTCATTCTCCTTCTTCAGGTCGAAATCAATTCGTG 1364
Query 899 CAGAGAGTCTTTCTTCTGGTCCAGCGTCTGCTGCTCAGAAGGAAGGACTGCTTGTCCTGA 958
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1365 CAGAGAGTCTCCCTTCTGGTCCATCATCTGCTGCTCAGAAGGAAGGACTGCTTGTCCTGA 1424
Query 959 AGAACAAAGCGCCTAGATGGCACGAACAGCTCCAGTGCTGGTGCCTCAACTTCAATGGGA 1018
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AAAACAAAGCGCCCAGATGGCACGAACAGCTCCAGTGCTGGTGCCTCAACTTCAATGGGA 1484
Query 1019 GAGTCACTGTTGCTTCGGTCAAAAACTTTCAGCTGGTAGCTGCTCCTGAGAATGGACCTG 1078
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GAGTCACAGTTGCTTCCGTCAAAAACTTTCAGCTGGTAGCTGCTCCTGAGAATGGACCTG 1544
Query 1079 CAGGACCTGAGCACGAAAACGTGATTCTCCAGTTCGGGAAAGTCGGAAAAGATGTGTTCA 1138
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1545 CAGGACCTGAGCACGAAAACGTGATTCTCCAGTTTGGAAAAGTCGGAAAAGATGTGTTCA 1604
Query 1139 CAATGGATTATCAGTACCCAATCTCTGCCTTCCAGGCCTTCACCATTTGCCTTAGCAGTT 1198
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1605 CAATGGATTATCAGTACCCTATCTCTGCCTTCCAGGCCTTCACCATTTGCCTCAGCAGTT 1664
Query 1199 TCGACACCAAGATAGCATGTGAATGA 1224
||||||||||||||||||||||||||
Sbjct 1665 TCGACACCAAGATAGCATGTGAATGA 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5