BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322437
Length=303
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 222 1e-57
> AT2G47950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: root, flower;
EXPRESSED DURING: petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G62990.1); Has 22 Blast hits to 22 proteins
in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:19624210-19624809 FORWARD LENGTH=600
Length=600
Score = 222 bits (120), Expect = 1e-57
Identities = 141/150 (94%), Gaps = 5/150 (3%)
Strand=Plus/Plus
Query 4 AACAACGTGTTTGATGTGTCACCGTTCTTGCTATTAGAAGCATCTGCAGATTCCGAAGCC 63
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 83 AACAACGTGTTTGATGTGTCACCGTTCTTGCTTTTAGAAGCATCTGCAGATTCCGAAGCT 142
Query 64 GGCCACGACAGCGTTGACGATGATAAATGCGTTAAGGATTACGATATTG---ATGAGTCT 120
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 143 GGCCACGACAGCGTTGACGATGATAAATGCGTTAAGGATTACGATCTTGGTCATGAGTCT 202
Query 121 TGC-AGTGCCAGTTCGTGCGAGACGTCTTG 149
| | ||||||||||| ||||||||||||||
Sbjct 203 T-CTAGTGCCAGTTCTTGCGAGACGTCTTG 231
Score = 215 bits (116), Expect = 2e-55
Identities = 132/140 (94%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 164 ACGACGACGGAGAAGGAGAGGTGAATAGCTACATAAGATGTGGAAGAAGCCAACGTGAAA 223
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 318 ACGAAGACGGAGAAGGAGAAGTGAATAGCTACATAAGATGTGGGAGAAGCCAACGTGAAA 377
Query 224 ATCTGGCCGTAGATTCTGGTGCGGTGGTGAGTGAGATTGATCAAAATCGAATGTTCTGGG 283
||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 378 ATCTGGCTGTGGATTCTGCTGCGGTGGTGAGTGAGATGGATCAAAATCGAATGTTCTGGG 437
Query 284 AAGCTTGCCTCGCATCTTGA 303
||||||| ||||||||||||
Sbjct 438 AAGCTTGTCTCGCATCTTGA 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14024701971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5