BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322445
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3227 0.0
> AT2G48060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm
cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes
- 105 (source: NCBI BLink). | chr2:19651196-19662617 REVERSE
LENGTH=7984
Length=7984
Score = 3227 bits (1747), Expect = 0.0
Identities = 1820/1856 (98%), Gaps = 2/1856 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGTTTTCTGGTGGGCTTCTTGTTGCCTTCGCTACTTCTGGCAGCTGCACTTATT 60
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 232 ATGGCGAGTTTTTTGGTGGGCTTCTTGTTGCCTTCGCTTCTTCTGGCAGCTGCACTTATT 291
Query 61 AACTGGAGTGTCATATCCTTGGTTGATTTGATTGCTTTCCTCCTCGTTCACTATATTGCA 120
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 292 AACTGGAGTGTCATATCCTTTCTTGATTTGATAGCTTTCCTCCTCGTTCACTATATTGCA 351
Query 121 CCTGAAATTGGACACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTT 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCTGAAATTGGATACCGTTTTCAGAGGAGGCATTGGCTATTATGGCCCATTTTCATCTTT 411
Query 181 TCCTTTGCAGTATTTCTTGCTCAAGTGGTCTACCTTGTCATTTGGGCTACTCTAGGTCAA 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 412 TCCTTTGCAGTATTTCTTGCTCAAGTGGTCTACCTTGTCATTTGGGCTGCTCTAGGTCAA 471
Query 241 GACTGGGATACAGCAGATACTGGCTGGATGAGAGTTTTTGGCTTTATGATATTAAAGTCT 300
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 472 GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATATTAAAGTCT 531
Query 301 TGGAGAAACCCCACTGTTATGTATTTCTTGGCTTTACAACTACTAACATCATTAGTTGCT 360
|||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 532 TGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACTACTAACATCATTGGTTGCT 591
Query 361 TTAGCTGACATATACAGTAGTAGATTCGGCTTCGCTCA-ATGGCGGGACACATGGTGGTC 419
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 592 TTAGCTGACATATACAGTAGTAGATTCGGCTTCGCT-AGATGGCGGGACACATGGTGGTC 650
Query 420 TTACTTTTCAGGAATTTTCGAACACCTAGGAAGTCATCTTAGGGTTGCCTCCTGCTTGTT 479
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TCACTTCTCAGGAATTTTCGAACACCTAGGAAGTCATCTTAGGGTTGCCTCCTGCTTGTT 710
Query 480 GTTACCAGCAGTTCAATTGGCAGTGGGAATCTGCAATCCATCATGGGTTTCTTTGCCATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GTTACCAGCAGTTCAATTGGCAGTGGGAATCTGCAATCCATCATGGGTTTCTTTGCCATT 770
Query 540 TTTTATTGGAAGCTGTGCCGGTCTTGTGGACTGGTCCTTGACAAGCAACGTTTCAGGAAT 599
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 771 TTTTATTGGAAGCTGTGCCGGTCTTGTGGACTGGTCCTTGACAAGCAATGTTTCAGGACT 830
Query 600 TTTCAGGTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTACCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TTTCAGGTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTACCT 890
Query 660 CTATCAACTACCAATAAACTTTTCAGATATGATTCGATGGATAGCAAGCTTTATAGGTCT 719
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 891 CTATCAACTACCAATAAACTTTTCCGATATGATTCGTTGGATAGCAAGCTTTATAGGTCT 950
Query 720 ATTCAGAATCTCCATGGAAACTGAAGGCCCTGATATTTGTTCTGGTGTTTTCCTTGTGTT 779
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 951 ATTCAGAATCTCCCTGGAAACTGAAGGCCCTGATATTTGTTCTGGTCTTTTCCTTGTGTT 1010
Query 780 GTTCTACATCATGCTATCCTATGTAAGGTCAGACCTCGAGGATATGGACTTTATCATGTC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GTTCTACATCATGCTATCCTATGTAAGGTCAGACCTCGAGGATATGGACTTTATCATGTC 1070
Query 840 CACGAGTGAAAATAACTTGGCAGAGCGGCTTCTTCCTCCAAAATATTCATTTTTTATTCG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CACGAGTGAAAATAACTTGGCAGAGCGGCTTCTTCCTCCAAAATATTCATTTTTTATTCG 1130
Query 900 AGAATCAAGGGCCGGTGTCAGGCACACCAATGTTTTACTGAGGGGAGCTGTGTTTAAGAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGAATCAAGGGCCGGTGTCAGGCACACCAATGTTTTACTGAGGGGAGCTGTGTTTAAGAC 1190
Query 960 TTTCAGTATTAATTTCTTCACATATGGTTTTCCGGTCTCTCTATTTGCTCTTTCGTTCTG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TTTCAGTATTAATTTCTTCACATATGGTTTTCCGGTCTCTCTATTTGCTCTTTCGTTCTG 1250
Query 1020 GAGTTTTCACTTTGCGAGCTTGTGCGCTTTTGGCCTCCTTGCATATGTTGGTTACATTAT 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1251 GAGTTTTCACTTTGCGAGCTTGTGTGCTTTTGGCCTCCTTGCATATGTTGGTTACATTAT 1310
Query 1080 TTATGCCTTCCCGTCATTGTTCCAGTTGCACAGATTAAATGGCCTTCTTCTCGTATTTAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TTATGCCTTCCCGTCATTGTTCCAGTTGCACAGATTAAATGGCCTTCTTCTCGTATTTAT 1370
Query 1140 ACTCTTATGGGCTGTCAGTACGTACATATTCAATGTGGCATTTTCTTTTCTGAACACTAA 1199
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1371 ACTCTTATGGGCTGTCAGTACGTATATATTCAATGTGGCCTTTTCTTTTCTGAACACTAA 1430
Query 1200 GGTTGGAAAGTTTGGTTTGGGGATGTTGGTCGCTTTGGGTAATCTTGTAAACAACTCTGT 1259
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1431 GGTTGGAAAGTTTGGTTTGGGGATGTTGGTCGCGTTGGGTAATCTTGTAAACAATTCTGT 1490
Query 1260 TTTTCTGTACCTGTCTGAAGAAAGCTCCAGATCTTCCAATGAGAGATCTTACGCTGAAGC 1319
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1491 TTTTCTGTACCTGTCTGAAGAGAGCTCCAGATCTTCCAATGAGAGATCTTACGTTGAAGC 1550
Query 1320 TGATGAAGAAACAAAGGTGTTGGTCGTCGCGACCATTGCTTGGGGATTGCGGAAATGCTC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TGATGAAGAAACAAAGGTGTTGGTCGTCGCGACCATTGCTTGGGGATTGCGGAAATGCTC 1610
Query 1380 ACGGGCTATTATGCTTGCACTGATTTTTCTCATTGCTATGAAACCTGGGTTTTTCCATGC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ACGGGCTATTATGCTTGCACTGATTTTTCTCATTGCTATGAAACCTGGGTTTTTCCATGC 1670
Query 1440 CGTATATGTGATATTCTTTCTTATGTATCTGTTGAGCCACAACATCAACAGAAAGATACG 1499
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 CGTATATGTGATATTCTTCCTTATGTATCTGTTGAGCCACAACATCAACAGAAAGATACG 1730
Query 1500 CAAGTCCTTGATTCTACTATGTGAAGTTCATTTTGCTCTTCTCTACATTCTTGAGATTGA 1559
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1731 CAAGTCCTTGATTCTACTATGTGAAGTTCATTTTGCACTTCTCTACATTCTTGAGATTGA 1790
Query 1560 CCTGGTGTCGAACTCCTTAAAGCAGGAAGGCTCTGTGAGCAGAGAAGTTCTATTTCAGTT 1619
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1791 CCTGGTGTCGAACTCCTTAAAGCAGGAAGGCTCTGCGAGCAGAGAAGTTCTATTTCAGTT 1850
Query 1620 AGGTCTCCTTAGGTCTGAAAGCTCTTGGGACTTCTTGGAGATAGCCTTGCTAGCTTGTTT 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1851 AGGTCTCCTTAGGTCTGAAAGCTCTTGGGACTTCTTGGAGATAGCCTTGCTAGCTTGCTT 1910
Query 1680 CTGTGCTATCCATAATCATGGTTTCGAGGTGCTATTTTCATTTTCAGCAATTGTACGCCA 1739
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1911 CTGTGCTATCCATAATCATGGTTTTGAGGTGCTATTTTCCTTTTCAGCAATTGTACGCCA 1970
Query 1740 TACACCAAGCCCTCCAATTGGATTTAGCATATTGAAAGCTGGTCTCAACAAATCAGTCCT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 TACACCAAGCCCTCCAATTGGATTTAGCATATTGAAAGCTGGTCTCAACAAATCAGTCCT 2030
Query 1800 CTTGTCTGTCTATTCGTCTCCATCTTCAAGTTATAGCCAGGATAATACTACTTACG 1855
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2031 CTTGTCTGTCTATTCGTCTCCATCTTCAAGTTATAGCCAGGATAATACCACTTACG 2086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93122010975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5