BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322448
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48080.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase ... 1399 0.0
> AT2G48080.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase
family protein | chr2:19664990-19667092 REVERSE LENGTH=1519
Length=1519
Score = 1399 bits (757), Expect = 0.0
Identities = 944/1025 (92%), Gaps = 49/1025 (5%)
Strand=Plus/Plus
Query 358 gatgatTCTCCCTCCAGCGACACCACTAATGGAGGATACCGGGAAGAAGACCAAACCCTC 417
|||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||
Sbjct 325 GATGATTCTCCCTCCAGCGACATCACTGATGGAGGATCCCGGGAAGAAG---AAACCCTC 381
Query 418 TCAATCTGTTGTAAGCACGAGGACGAATGTGAATCACGAGGAGCCTCACTCCTCAAGCAC 477
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TCCATCTGTTGTAAGCACGAGGACGAATGTGAATCACGAGGAGCCTCACTCCTCAAGCAG 441
Query 478 TCCAAGCGTTTCTCCGCC-----A-A-G---GA--ACAT---GCCAATGTTGTCAAAGGC 522
|||||||||||||| ||| | | | || |||| ||||||||||||||||||
Sbjct 442 TCCAAGCGTTTCTCGGCCAAGGAACATGTTAGAGGACATACGGCCAATGTTGTCAAAGGC 501
Query 523 CTCAAACTCTACGAAGATGTCTTCACTGGTA-CTCAACTCTCCAAGCTTCTGGATTCTAT 581
|| ||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 502 CTTAAACTCTACCAAGATGTCTTCACTCG-ACCTCAACTCTCCAAGCTTCTGGATTCTAT 560
Query 582 TAATCAGCTCCGAGAGGCTGGTCGGAATCACCAACTTTCAGGGGAGACCTTTGTTCTGTT 641
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 561 TAATCAGCTCCGAGAGGCTGGTCGGAATCACCAACTTTCAGGGGAGACCTTCGTTCTGTT 620
Query 642 CAACAAGAACACCAAGGGAACCAAAAGAGAGCTTCTTCAGCTTGGAGTTCCTATTTTCGG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CAACAAGAACACCAAGGGAACCAAAAGAGAGCTTCTTCAGCTTGGAGTTCCTATTTTCGG 680
Query 702 CAACACCACGGATGAACACTCAGTGGAACCTATCCCAACCCTTGTCCAAAGTGTGATCGA 761
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 681 CAACACCACGGATGAACACTCTGTGGAACCTATCCCAACCCTTGTCCAAAGTGTTATCGA 740
Query 762 CCATCTTCTTCAATGGCGTGTGATTCCTGAATACAAACGACCAAATGGCTGTGTGATCAA 821
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCATCTTCTTCAATGGCGTCTGATTCCTGAATACAAACGACCAAATGGCTGTGTGATCAA 800
Query 822 CTTCTTCGATGAGGACGAACACTCTCAACCATTTCAGAAACCTCCTCACGTGGATCAACC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CTTCTTCGATGAGGACGAACACTCTCAACCATTTCAGAAACCTCCTCACGTGGATCAACC 860
Query 882 CATATCCACTCTTGTCTTGTCTGAATCAACCATGGTGTTTGGGCACAGACTCGGGGTCGA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CATATCCACTCTTGTCTTGTCTGAATCAACCATGGTGTTTGGGCACAGACTCGGGGTCGA 920
Query 942 TAACGATGGCAACTTCAGGGGCTCACTCACTCTCCCACTAAAGGAAGGGTCGTTGCTGGT 1001
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 921 TAACGATGGCAACTTCAGAGGCTCACTCACTCTCCCACTTAAGGAAGGGTCGTTGCTGGT 980
Query 1002 GATGAGGGGTAACAGCGCAGATATGGCCAGGCATGTAATGTGCCCCTCGCCCAACAAAAG 1061
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 981 GATGAGGGGTAACAGTGCAGATATGGCTAGGCATGTAATGTGTCCCTCGCCCAACAAAAG 1040
Query 1062 AGTCGCAATCACCTTCTTCAAACTCAAACCGGACTCCGGTAAGGTCCAGCCGCCCCCCAC 1121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1041 AGTCGCAATCACCTTCTTCAAACTCAAACCGGACTCCGGTAAGGTCCAGCCGCCGCCCAC 1100
Query 1122 CCTATGGCGACCAGGCACCCCAGCTCCTCCGGCTTGCGGAATGGTCATAGCTCCGTTGGT 1181
||||||| ||||||||||||| |||||| || | | | || | |||||||| |
Sbjct 1101 CCTATGGAGACCAGGCACCCCTTCTCCTCTGG-T-G---A-TG--C-TAGCTCCG--G-- 1147
Query 1182 GATGCTAGCTCCGGCTCCCAAGAGGATAGACGCTGGCACTGGAGTTTTCTTGCCGTGGAC 1241
| || || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1148 ----C--GC-CC-------AAGAGGCTAGACGCTGGCACTGGAGTTTTCTTGCCGTGGAC 1193
Query 1242 ACCGCCAGT-TACAAGAAAACCAACGAAGCATCTCCCGCCGCGAGTCCAGAGGCTGCGTC 1300
||||||||| | ||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 1194 ACCGCCAGTGT-CAAGAAAACCAGCCAAGCATCTCCCGCCGCGTGTCCAGAGGCTGCGTC 1252
Query 1301 TCTTGTCATCAGCAAAGCCAGTGGCAGATCGTGAGGCATCGTCGCCAGAGATAGGAGTGA 1360
||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1253 TCTTGTCATCATCAAAGTCAGTGGCAGATAGTGAGTCATCGTCGCCAGAGATAGGAGTGA 1312
Query 1361 GCTGA 1365
| |||
Sbjct 1313 GTTGA 1317
Score = 444 bits (240), Expect = 1e-123
Identities = 284/304 (93%), Gaps = 8/304 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGAAACGCCGGCTTCTCCTCCTCTTCACCCTCCCGTT---CTTTTGTCCGATTCC 57
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTGAAACGCCGGCTTCTCCTCCTCTTCACCCTCCCGTTGTTCTTTTGTCCGATTCC 60
Query 58 GCCGCCAAAGACACCATGCTCACTTGGTTTCGCGGCGAGTTTGCGGCCACCAACGCCATC 117
|||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GCCGCCAAGGACGCCATGCTCACTTGGTTTCGCGGCGAGTTTGCGGCCGCCAACGCCATC 120
Query 118 ATCGATGCTCTATGCGCTCACCTTATGCAGGGCTCCGTCGGATCCGCTCAATACGAGTCT 177
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 121 ATCGATGCTCTCTGCGCTCACCTTATGCAGGCCTCCGGCGGATCCGCTCAATACGAGTCT 180
Query 178 GTCATGGCTGCCCTTCATCGCCGGC-GGCTCAACTAGATCCATGTCCTCCAGATGCAGAA 236
|||||||| |||||||||||||| | ||||||||| ||||| ||||||||||||||||||
Sbjct 181 GTCATGGCAGCCCTTCATCGCCG-CAGGCTCAACTGGATCCCTGTCCTCCAGATGCAGAA 239
Query 237 GTACCATTCCATCTCTCAAATCACCCTCCAGCTACAACAA--TT-GACAAAAGGCTTTCA 293
||||||||||||||||||| |||||||||||||||||||| || | | |||||||||||
Sbjct 240 GTACCATTCCATCTCTCAAGTCACCCTCCAGCTACAACAACATTTGGCTAAAGGCTTTCA 299
Query 294 TCAT 297
||||
Sbjct 300 TCAT 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5