BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322456
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48130.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 859 0.0
> AT2G48130.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:19685066-19685993
REVERSE LENGTH=765
Length=765
Score = 859 bits (465), Expect = 0.0
Identities = 525/554 (95%), Gaps = 4/554 (1%)
Strand=Plus/Plus
Query 1 ATGGGGTATAGAAGAAACTACGCAATCACATTTGTAGCCCTTGTGGTGGCTCTATGGGGC 60
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 17 ATGGGGTATAGAAGAAGCTACGCAATCACATTTGTAGCCCTTGTGGCGGCTCTATGGAGC 76
Query 61 GTAACAAAAGCACAGCCGAGCGGGTCATGCGTGAGCACACTGACCACTCTCTCTCCGTGC 120
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 77 GTAACAAAAGCACAGCCGAGCAGTTCATGCGTGAGCACACTGACCACTCTCTCTCCGTGC 136
Query 121 CTCAGCTACATCACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCAGCTCGAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 137 CTCAGCTACATCACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCGGCTCGAC 196
Query 181 TCTGTCATCAAATCTTCACCGCAGTGCATCTGCTCAGCCGTAAACAGTCCGATTCCCAA- 239
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 197 TCTGTCATCAAATCTTCGCCGCAGTGCATCTGCTCAGCCGTCAACAGTCCGAT-CCCAAA 255
Query 240 CATCGGTCTTAACATTAACCGCACACAGGCCTTGCAGCTCCCCAATGCCTGCAACATTCA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CATCGGCCTTAACATTAACCGCACACAGGCCTTGCAGCTCCCCAATGCCTGCAACATTCA 315
Query 300 GACGCCTCCCCTCACACAATGCAACGCGGCCACTGGTCCAGCAGCACCGCCTCCGGC-CC 358
|||||||||||||||||||||||||||||||||||||||| |||||| |||||| || ||
Sbjct 316 GACGCCTCCCCTCACACAATGCAACGCGGCCACTGGTCCAACAGCACAGCCTCCCGCACC 375
Query 359 CTTCACCGACGGAAAATACCTCAGATGTGACACTAACCCCAACCTCATCGCCGGGTGCTC 418
|| ||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 376 CT-CACCGACGGAAAAGACCCCAGATGTGACACTAACCCCAACCTCATTGCCGGGTGCTC 434
Query 419 GTTCAGGAGTTGGAGGTGGTTCCAAGACCGTTCCCTCTGCTGGTTCCGGCTCGTCCAGCG 478
|||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||
Sbjct 435 GTTCAGGAGTTGGAGGTGGTTCCAAGACAGTTCCCTCCGTTGGTACCGGCTCGTCCAGCA 494
Query 479 GGAACGTTGACCACGTGCCGCTGCATTTTCTTATGTTTGCTGTATTTTTGGTCTGCACTT 538
|||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 495 GGAATGTTGACCCCTTGCCGCTGCATTTTCTTATGTTTGCTGTATTGGTGGTCTGCACTT 554
Query 539 CTTCTTTTCTTTAA 552
||||||||||||||
Sbjct 555 CTTCTTTTCTTTAA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5