BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322459
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01100.1 | Symbols: | unknown protein; Has 19420 Blast hits... 1083 0.0
> AT2G01100.1 | Symbols: | unknown protein; Has 19420 Blast hits
to 10641 proteins in 779 species: Archae - 0; Bacteria -
1003; Metazoa - 10257; Fungi - 1826; Plants - 1570; Viruses
- 56; Other Eukaryotes - 4708 (source: NCBI BLink). | chr2:81437-83290
FORWARD LENGTH=1211
Length=1211
Score = 1083 bits (586), Expect = 0.0
Identities = 721/781 (92%), Gaps = 29/781 (4%)
Strand=Plus/Plus
Query 1 ATGGACTGCAAGAAGTTCATCCAGATGGTTGAGGAGAAGAAACGACGAGTTCTAGAGAAG 60
||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 166 ATGGACTGCAAGAAGTTCATCCAGATGGTCGAGGAGAAGAAACGAAGAGTTCTTGAGAAG 225
Query 61 CAAGAAGCTCCTTTGAAATGGGAGCAGAAGCTAGAGGCGGCTGCCAATGCTAAAGCTGAC 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 226 CAAGAAGCTCCTTTGAAATGGGAGCAGAAGCTAGAGGCGGCTGCGAATGCCAAAGCAGAC 285
Query 121 ACAGAAACCAAAGTAAAGAAG-TCAAAGGGCACTAAGAGAAAACAAAGGGGTGCATCTGA 179
|||||||| ||||| ||| || ||||||||| |||||||||||||||||| ||| |||||
Sbjct 286 ACAGAAACTAAAGTGAAG-AGATCAAAGGGCCCTAAGAGAAAACAAAGGGCTGCGTCTGA 344
Query 180 ATCTAGCTCAGAAAGTGATAGTAGCTCTGAGGTGAGAAGAAAGTCTAGAAGATCTCACAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 ATCTAGCTCAGAAAGTGATAGTAGCTCTGAGGTGAGAAGAAAGTCTAGAAGATCTCACAA 404
Query 240 TAGGCACCGAAGACATGCCCACTTTGATTCAGATGACAGTGATAGGAGGAAAGAGAAGAA 299
|| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 405 TAAGCACCGAAGACATGCACACTCTGATTCAGATGACAGTGATAGGAGGAAAGAGAAGAA 464
Query 300 ATCCAAGAGGCAGAAAAG-A--------AG--C-A---ATGATAGCACTGATGATTATGA 344
||||| |||||||||||| | || | | |||||||||||| |||||||||
Sbjct 465 ATCCAGGAGGCAGAAAAGAAGGTCCTTGAGTCCAAGCGATGATAGCACTGGTGATTATGA 524
Query 345 AAGCGGGTCAGAGGATGAGC------TG-AG-----GCACCATCGGAGGCACAAGTGGCA 392
||| |||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 525 AAGTGGGTCAGAGGATGAGCTGAGGATGAAGATAAAGCACCATCGGAGGCACAAGTGGCA 584
Query 393 TAGCTCAAGAAAGACTTGCGATGATGACAGTACCGAAGATGTGAGAAGAAGACATTTAAA 452
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 585 TAGCTCAAGAAAGACTTGCGATGATGACAGTACCGAAGATGTGAGAAGAAAACATTTAAA 644
Query 453 GCATCACAGGCGCAGTGAGTTGGTCACTTCAAGTGATAGTGAGGAAGAGAGTGGAAGAAG 512
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GCATCACAGGCGCAGTGAGGTGGTCACTTCAAGTGATAGTGAGGAAGAGAGTGGAAGAAG 704
Query 513 AAGGCGAGGCAAATATCACAGGCACAAAAGAGGTTCAGCCTCCTCGAGTGGCTCGGAAGA 572
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 705 AAGGCGAGGCAAATATCACAGGCACAACAGAGGTTCAGCCTCCTCGAGTGGCTCGGAAGA 764
Query 573 AGATAGTGGAAAAAGTAGGAAGAGAAGGCAACATAAAAGGCATCATTTGGCTGAGTCTTC 632
||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 765 AGATAGTGGGAAAAGTATGAAGAGAAGGCAACATAAAAGGCATCGTTTGGCTGAGTCTTC 824
Query 633 AAGTGAGGAAGATGGAGCAATGAGAAGGAGGAGGCATCATAAACATGACAGAGATTCAGC 692
||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 825 AAGTGAGGAAGATGGGGCAATGAGAAGGACTAGGCATCATAAACATGGCAGAGATTCAGC 884
Query 693 ATCCGAGTCTGATGGAAGAAGGTTATCAGATGAGAAAAGAGAGCACAACTTGGACAAATG 752
||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||
Sbjct 885 ATCTGAGTCTGATGGAAGAAGGTAATCAGATGAGAAAAGAGAGCACTACTTCGACAAATG 944
Query 753 A 753
|
Sbjct 945 A 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5