BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322471
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family prote... 1208 0.0
AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family prote... 678 0.0
AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family prote... 558 2e-158
> AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:132697-134455 REVERSE LENGTH=1081
Length=1081
Score = 1208 bits (654), Expect = 0.0
Identities = 704/729 (97%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGAGTCAAAGGTTGTAGTTCCGGAGTCGGTGTTGAAGAAGCGgaagagagaggaa 60
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 107 ATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAGAGGAG 166
Query 61 gaatgggctttggagaagaagcagaatgctgaagccgccaagaagaagaaCGCAGAGAAC 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 167 GAATGGGCTTTGGAGAAGAAGCAGAATGTTGAAGCCGCCAAGAAGAAGAACGCCGAGAAC 226
Query 121 AGGAAGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGGAGAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AGGAAGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGGAGAAG 286
Query 181 GAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAA 346
Query 241 GCTAAGCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACCAAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 347 GCTAAGCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACTAAG 406
Query 301 AAGATTCTCCAGCTTTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAGTCAAC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AAGATTCTCCAGCTCTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAGTCAAC 466
Query 361 AAGGCTACAATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATACCCTAAC 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 467 AAGGCTACGATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATTCCCTAAC 526
Query 421 TTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTATGGCAAGCTAAACCACCAGAGG 480
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 527 TTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGG 586
Query 481 GTGGCTTTGACTGACAACTCTATCGTTGAGCAGGCTCTAGGAAAGCATGGGATCATCTGC 540
| |||||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||
Sbjct 587 ATAGCTTTGACTGACAACTCTATTGTAGAGCAGGCTCTTGGAAAGCATGGTATCATTTGC 646
Query 541 ACTGAGGATTTGATCCACGAGATTCTAACAGTAGGACCTCATTTCAAGGAAGCTAACAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 647 ACTGAGGATTTGATCCACGAGATTCTAACAGTAGGACCTCATTTCAAGGAAGCCAACAAC 706
Query 601 TTCCTTTGGCCATTCCAGCTCAAGGCACCTCTCGGTGGCCTCAAGAAGAAGAGAAATCAC 660
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 707 TTCCTTTGGCCATTCCAGCTTAAGGCACCACTAGGTGGCCTCAAGAAGAAGAGAAATCAC 766
Query 661 TACGTGGAAGGTGGTGATGCTGGAAACCGTGAGAACTTCATCAATGAGCTTGTCAGGAGG 720
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 767 TACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTTCATCAATGAGCTTATCAGGAGG 826
Query 721 ATGAATTAG 729
|||||||||
Sbjct 827 ATGAATTAG 835
> AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:18249042-18250708 REVERSE LENGTH=1220
Length=1220
Score = 678 bits (367), Expect = 0.0
Identities = 617/737 (84%), Gaps = 20/737 (3%)
Strand=Plus/Plus
Query 1 ATGGTTGAGTCAAAGGTTGTAGTTCCGGAGTCGGTGTTGAAGAAGCGgaagagag-agga 59
|||| ||| || ||||| || ||||| ||||| ||| | |||||| ||||| | | ||
Sbjct 307 ATGGCTGAATCCAAGGTAGTGGTTCCAGAGTCTGTGCTAAAGAAGATCAAGAG-GCAAGA 365
Query 60 agaatgggctttggagaag-aagca-gaatgctgaagccgccaagaagaagaaCGCAGAG 117
|||||||| |||| ||| ||| | ||| |||| ||| || |||||||||| | |||
Sbjct 366 GGAATGGGCATTGGCCAAGAAAG-ATGAA-GCTGTAGCTGCTAAGAAGAAGAGTGTTGAG 423
Query 118 AACAGGAAGCTTATCTTCAAAAGAGCCGAGCAATACT-CCAAGGAATATGCCGAGAAGGA 176
| | |||||||||||||| ||||| ||||| || | |||| ||||| || ||||||||
Sbjct 424 GCCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTA-TGCCAAAGAATACGCTGAGAAGGA 482
Query 177 GAAGGAGTTGATCTCG-TTGAAACGCGAGGCCAAGCTT-AAGGGAGGTTTCTATGTTGAC 234
|| ||||||||| || ||||| || ||||| ||| || || ||||||||||| ||||||
Sbjct 483 TAACGAGTTGATC-CGATTGAAGCGGGAGGCTAAG-TTGAAAGGAGGTTTCTACGTTGAC 540
Query 235 CCTGAAGCTAAGCT-CTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAA 293
||||| |||||| | | | || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 541 CCTGAGGCTAAGTTGC-TCTTTATCATTCGTATCCGTGGTATCAATGCCATTGACCCAAA 599
Query 294 GACCAAGAAGATTCTCCAGCTTTTGCGTTTGAGACAGATTTTCAATGGTGT-TTTCCTTA 352
|||||||||||||| ||||| |||||||||||||||| ||||||||||| |||| |||
Sbjct 600 AACCAAGAAGATTCTGCAGCTCCTGCGTTTGAGACAGATCTTCAATGGTGTGTTTC-TTA 658
Query 353 AAGTCAACAAGGCTACAATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGAT 412
| || |||||||| ||| | |||||||| ||||| ||||| || || || ||||||||||
Sbjct 659 AGGTGAACAAGGCAACAGTAAACATGCTGCGCCGAGTTGAACCATACGTGACTTACGGAT 718
Query 413 ACCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTATGGCAAGCTAAACC 472
|||| ||||||||||| || |||||| |||||||||| ||||||||||| ||||| ||||
Sbjct 719 ACCCAAACTTGAAGAGCGTTAAGGAACTGATCTACAAAAGAGGTTATGGAAAGCTGAACC 778
Query 473 ACCAGAGGGTGGCT-TTGACTGACAACTCTATCGTTGAGCAGGCTCTAGGAAAGCATGGG 531
|||||||| | || || ||||||||||| || || || |||||||| ||||||||||||
Sbjct 779 ACCAGAGGATAGCACTT-ACTGACAACTCCATTGTGGATCAGGCTCTCGGAAAGCATGGG 837
Query 532 ATCATCTGCACTGAGGATTTGATCCACGAGATTC-TAACAGTAGGACCTCATTTCAAGGA 590
||||||||| ||||||| | ||||||||||| | | || || |||||||| ||||||||
Sbjct 838 ATCATCTGCGTTGAGGATCTCATCCACGAGAT-CATGACTGTTGGACCTCACTTCAAGGA 896
Query 591 AGCTAACAACTTCCTTTGGCCATTCCAGCTCAAGGCACCTCTCGGTGGCCTCAAGAAGAA 650
||| ||||||||||| ||||||||||| | |||||||| ||||||||||| ||||||||
Sbjct 897 AGCCAACAACTTCCTGTGGCCATTCCAATTGAAGGCACCACTCGGTGGCCTTAAGAAGAA 956
Query 651 GAGAAATCACTACGTGGAAGGTGGTGATGCTGGAAACCGTGAGAACTTCATCAATGAGCT 710
|||||| |||||||| ||||||||||||||||||||| | ||||| |||||||| |||||
Sbjct 957 GAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAATTTCATCAACGAGCT 1016
Query 711 TGTCAGGAGGATGAATT 727
||||||||| |||||||
Sbjct 1017 TGTCAGGAGAATGAATT 1033
> AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family protein
| chr3:4433171-4435305 FORWARD LENGTH=1569
Length=1569
Score = 558 bits (302), Expect = 2e-158
Identities = 595/734 (81%), Gaps = 30/734 (4%)
Strand=Plus/Plus
Query 7 GAGTCAAAGGTTGTAGTTCCGGAGTCGGTGTTGAAGAAGCGgaagagagaggaagaatgg 66
||||| ||| ||| ||||| ||||| |||||||||||| | ||||| ||||||||||||
Sbjct 651 GAGTCCAAGACTGTTGTTCCTGAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGG 710
Query 67 gc-tttggagaagaagcagaatgc-tgaagccgccaagaagaagaaCGCAGAGAACAGGA 124
|| || | ||||| ||| | || ||| || ||||| ||| |||| || ||||| ||||
Sbjct 711 GCACTT-GCCAAGAAACAGGA-GCTTGAGGCTGCCAAAAAGCAGAATGCTGAGAAGAGGA 768
Query 125 AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCC--GAGAAGGAGAA-GG 181
| || || || || | || | || ||||||||||| || || ||||| || || ||
Sbjct 769 AACTCATATTTAACCGGGCTAAACAGTACTCCAAGGAGTA--CCAGGAGAAAGA-AAGGG 825
Query 182 AGTTGATCTC-GTTGAAACGCGAGGCCAAGCTT-AAGGGAGG-TTTCTATGTTGACCCTG 238
| || ||| | | |||| || |||| ||| || || ||||| ||| ||||||||||| |
Sbjct 826 AATTAATC-CAGCTGAAGCGTGAGG-CAAAATTGAAAGGAGGCTTT-TATGTTGACCCAG 882
Query 239 AAGCTAAGCT-CTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACC 297
||||||| || ||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 883 AAGCTAAACTGCTT-TTCATTATCCGTATCCGTGGTATCAATGCCATTGACCCAAAGACA 941
Query 298 AAGAAGATTCTCCAGCTTTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAG-T 356
||||||||| | || ||||||||||| |||||||||||||||||||| ||| || ||| |
Sbjct 942 AAGAAGATTTTGCAACTTTTGCGTTTAAGACAGATTTTCAATGGTGTGTTC-TTGAAGGT 1000
Query 357 CAACAAGGCTACAATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATACCC 416
||||||||| || || |||||||||||||||||||| |||||||| || || ||||||||
Sbjct 1001 CAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTAACCTATGGATACCC 1060
Query 417 TAACTTGAAGAGTGTCAAGGAATTGATCTACAAGA-GAGGTTATGGCAAGCTAAACCACC 475
||||| || ||||| ||||||||||| ||||| | |||||| ||| ||||| |||||||
Sbjct 1061 GAACTTAAAAAGTGTGAAGGAATTGATTTACAA-ACGAGGTTTTGGAAAGCTTAACCACC 1119
Query 476 AGAGGG-TGGCTTTGACTGACAACTCTATCGTTGAGCAGGCTCTAGGAAAGCATGGGATC 534
||||| || ||| || ||||| ||||| || || |||| |||||||||||||| |||
Sbjct 1120 AGAGGACTGCCTTA-ACAGACAATTCTATTGTAGATCAGGGGCTAGGAAAGCATGGCATC 1178
Query 535 ATCTGCACTGAGGATTTGATCCACGAGATTC-TAACAGTAGGACCTCATTTCAAGGAAGC 593
|||||| ||||||| ||||||| ||||| | | || || || || ||||||||||||||
Sbjct 1179 ATCTGCGTTGAGGATCTGATCCATGAGAT-CATGACGGTTGGGCCACATTTCAAGGAAGC 1237
Query 594 TAACAACTTCCTT-TGGCCATTCCAGCTCAAGGCACC-TCTCGGTGGCCTCAAGAAGAAG 651
|| ||||| || |||||||||||| | ||||| || | | || || | |||||||||
Sbjct 1238 CAATAACTTT-TTGTGGCCATTCCAGTTGAAGGCTCCAT-TGGGAGGGATGAAGAAGAAG 1295
Query 652 AGAAATCACTACGTGGAAGGTGGTGATGCTGGAAACCGTGAGAACTTCATCAATGAGCTT 711
|| || || ||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 1296 AGGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTC 1355
Query 712 GTCAGGAGGATGAA 725
|| ||||| |||||
Sbjct 1356 GTTAGGAGAATGAA 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5