BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322480
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01340.1 | Symbols: At17.1 | Encodes a protein whose express... 905 0.0
> AT2G01340.1 | Symbols: At17.1 | Encodes a protein whose expression
is responsive to nematode infection. | chr2:163954-165290
FORWARD LENGTH=930
Length=930
Score = 905 bits (490), Expect = 0.0
Identities = 599/649 (92%), Gaps = 17/649 (3%)
Strand=Plus/Plus
Query 1 ATGGGTAATAGTTTAGGCGGCAAGAAAACGACCAAAGTCATGAAGATAGACGGCGAGACT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGGTAACAGTTTAGGCGGCAAGAAAACGACCAAAGTCATGAAGATAGACGGCGAGACT 120
Query 61 TTTAAACTGAAAACTCCGGTGACGGCGGAGGAGGTCTTGAAAGACTTTCCCGGCCACGTT 120
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 121 TTTAAACTGAAAACTCCGGTGACGGCTGAGGAGGTCTTAAAAGACTTTCCCGGCCACGTC 180
Query 121 TTGTTAGACTCTGAATCCGTCAAGCACTACGGTGCCCGAGCCAAACCACTTGAGGCAAAG 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TTGTTAGACTCCGAATCCGTCAAGCACTACGGTGCCCGAGCCAAACCACTTGAGGCGAAG 240
Query 181 CAGAGGTTGGAGGCGAAGCGGCTATATTTCGTGGTGGAGCCGGTGAAAGAGTGTCCACCG 240
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 CAGAGGTTGGAGGCGAAGCGGCTTTATTTTGTGGTGGAGCCGGTGAAAGAGTGTCCACCG 300
Query 241 AGAAGGGTAAGATCGGGAATCCACGTGAGTGCCAAGGAGAGGCTTGAGAGCCTCATGCTT 300
|||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 301 AGAAGGGTAAGATCAGGAATTCACGTGAGTGCAAAGGAGAGGCTTGAGAGTCTCATGCTG 360
Query 301 GCCCGGAGATCCTCCTCCGATCTCTCCATACTCAAACCAGCAGGAGGATGGACGACGGAG 360
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GCCCGGAGATCGTCTTCCGATCTCTCCATACTCAAACCACCAGGAGGATGGACGACGGAG 420
Query 361 GAAGAAGAAGGAGCGGTGAGGAGGGTGAAAGTGAGGATTCCCAAGGCGGAGCTTGAAA-G 419
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
Sbjct 421 GAAGAAGAAGGAGCGGTGAGGAGGGTGAAGGTGAGGATTCCCAAAGCTGAGCTTGAAAAG 480
Query 420 ACTCGTCAAGGAAGGAGCCACCGAAGCCGAAGCCACCCAAAAGATCGCTGCTCTCTTTAT 479
||||| || ||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 481 -CTCGTTAAAGAAGGAGCCACCGAAGCCGAAGCTACGCAGAAGATCGCTGCTCTCTTTAT 539
Query 480 GGCTAAACAGAGGCAAGAGGAGGCACATCAGAACACGCGGGAGGACGAGCCCGCCACCAC 539
||| ||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 540 GGCCAAACAGAGGCAAGAGGAGGCATATCAGAACACACGACAGGACGAGCCCGCCACCAC 599
Query 540 CGTCACTGCC---GCC---------GCCACAAGAGGAGTCAAATCCCGTCTGAAACGAGT 587
| ||| ||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 600 GGCCACCGCCACCGCCACCACCACCGCCACAAGAGGAGTCAAATCCCGTTTGAAACGAGT 659
Query 588 GAGTTTCATGGCGGAAAGAGGAGGA---AGCGAGATCACTGTAGCTTGA 633
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 GAGTTTCATGGCGGAAAGAGGAGGAGGGAGCGAGATCACTGTAGCTTGA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5