BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322482
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01390.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2451 0.0
AT2G01360.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 590 2e-167
> AT2G01390.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:172256-174137 FORWARD LENGTH=1734
Length=1734
Score = 2451 bits (1327), Expect = 0.0
Identities = 1617/1755 (92%), Gaps = 27/1755 (2%)
Strand=Plus/Plus
Query 1 ATGCGCTTCTCTACCATCTTCCGCAACATCACCCCAACCCAATTCTCCGGTCGCCGGAGC 60
||||||||||||| |||||||||| | || ||||||| |||||||||| ||||||||||
Sbjct 1 ATGCGCTTCTCTAGCATCTTCCGC-A-AT-ACCCCAATCCAATTCTCCAATCGCCGGAGC 57
Query 61 TCCGTCAAGCTACTTCACGCTCTTCCTCGTCCAAAACCGAGAAACCCCACCAACTCCAAG 120
|||||||||||||||||| ||||||||||| | | ||| |||||||||||||||
Sbjct 58 TCCGTCAAGCTACTTCACTCTCTTCCTCGT-------CTA-AAA-CCCACCAACTCCAAG 108
Query 121 CGATTCTTCCAAAAACCCAAACTTGTGAAAACACAGAGCCC-CCCAGATCCAAGGGTTTA 179
||||||| ||||||||||||||||||||||||||||| ||| |||||||| || |||||
Sbjct 109 CGATTCTCCCAAAAACCCAAACTTGTGAAAACACAGA-CCCTACCAGATCCCAGTGTTTA 167
Query 180 CACAAGAGACATTGTATCCAACATCTATAACATCCTCAAGTACTCCACTTGGGAATCTGC 239
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 168 CACAAGAGACATTGTATCCAACATCTATAACATCCTCAAGTACTCCAATTGGGACTCTGC 227
Query 240 TCAAGAACAGCTCCCACATCTCGGCGTCAGATGGGATTCTCACATTATCAACCGTGTCTT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TCAAGAACAGCTTCCACATCTCGGCGTCAGATGGGATTCTCACATTATCAACCGTGTCTT 287
Query 300 GAAAGCTCATCCTCCGATGCAGAAAGCTTGGCTCTTTTTCAATTGGGCTTCTCAAATCAA 359
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 288 GAAAGCACATCCTCCGATGCAGAAAGCTTGGCTCTTTTTCAACTGGGCTGCTCAAATCAA 347
Query 360 GGGATTCAAACACGACCACTTCACTTACACCACCATGCTCGATATCTTCGGTGAAGCCGG 419
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 348 GGGTTTCAAACACGACCACTTCACTTATACCACCATGCTCGATATCTTCGGAGAAGCCGG 407
Query 420 TCGGATTCAATCCATGTACTCTGTTTTTCACCTTATGAAGGAGAAGGGTGTGTTGATCGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TCGGATTCAATCCATGTACTCTGTTTTTCACCTTATGAAGGAGAAGGGTGTGTTGATCGA 467
Query 480 TACGGTGACTTATACATCGCTGATTCACTGGGTTTCAAGTTCCGGCGATGTGGATGGAGC 539
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 468 TACGGTGACTTATACATCGCTGATTCACTGGGTTTCAAGCTCCGGTGATGTGGATGGAGC 527
Query 540 AATGAGGTTGTGGGAGGAGATGAGAGATGATGGGTGCGAACCCACCGTCGTATCGTACAC 599
|||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||
Sbjct 528 AATGAGGTTGTGGGAGGAGATGAGAGATAATGGGTGCGAACCTACCGTTGTGTCGTACAC 587
Query 600 TGCTTACATGAAGATACTTTTCGCCGATGGGAGGGTTGAAGAAGCCACGGAGGTGTATAA 659
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 588 TGCTTACATGAAGATGCTTTTCGCTGATGGGAGGGTGGAAGAAGCCACGGAGGTGTATAA 647
Query 660 GGACATGTTACGGTCGCGAGTTTCTCCGAATTGTCACACTTATACGGTATTGATGGAGTA 719
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 648 GGAGATGTTACGGTCGCGGGTTTCTCCGAATTGTCACACTTATACTGTATTGATGGAGTA 707
Query 720 TCTTGTTAGC-ACAGGAAAATGTGAGGAAGCCTTAGACATTTTCTTTAAGATGCAAGAAA 778
|||||| || ||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 708 TCTTGTC-GCCACAGGAAAATGTGAGGAAGCCTTGGACATATTCTTTAAAATGCAAGAAA 766
Query 779 TTGGGGTTCAGCCAGATAAACCAGCTTGCAATATTCTGATAGTGAAAGC-TTGTAAATTC 837
|||| || |||||||||||| ||||||||||||||||||||| |||||| ||| |||||
Sbjct 767 TTGGTGTGCAGCCAGATAAAGCAGCTTGCAATATTCTGATAGCGAAAGCCTTG-AAATTT 825
Query 838 GGGGAAACATCATTCATGGCTCGAGTTCTTGTATACATGAAAGAGAATGGTGTTGTCCTT 897
||||||||||| |||||| ||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 826 GGGGAAACATCTTTCATGACTCGAGTTCTTGTGTACATGAAAGAAAATGGAGTTGTCCTA 885
Query 898 CGTTACCCTATCTTTCTTGAAGCTTCAGAGACCCTGAAAGCCGCAGGCGAAAGTGATGAT 957
|| || ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 886 CGCTATCCTATCTTTGTTGAAGCTTTAGAGACACTGAAAGCTGCAGGCGAAAGTGATGAT 945
Query 958 CTGTTACGGCAAGTCAACTCGCATATTTCCGCTGAATCTTTGTTGTGCTCCAAAGACATC 1017
|||||| || ||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 946 CTGTTAAGGGAAGTCAACTCGCATATTTCCGTTGAATC---GTTGTGCTCCAGTGACATT 1002
Query 1018 GATGAGACTCCAACAACCGAAGTTGATGACACTAACAGTTCAGATGATAGTAGAGTTATC 1077
||||||||||||||| | |||||| |||||||||| | ||||||||||||||||||||||
Sbjct 1003 GATGAGACTCCAACAGCGGAAGTTAATGACACTAAGAATTCAGATGATAGTAGAGTTATC 1062
Query 1078 AGCTCCGTTCTCTTGATGAAGCAGAATCTGGTTGCAGTTGATC-TTATT-CTTAACCAGA 1135
||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||
Sbjct 1063 AGCTCCGTTCTCTTGATGAAGCAGAATCTGGTTGCAGTTGA-CATT-TTACTTAACCAGA 1120
Query 1136 TGATAGATAGGAACATAAAGTTGGATTCTTTTGTTGTTTCAACAATCGTAGAAACAAACT 1195
||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1121 TGAGAGATAGGAACATAAAGCTGGATTCTTTTGTTGTTTCAGCAATCATAGAAACAAACT 1180
Query 1196 GTGACCGTTGTAGAACAGAGGGTGCTTCGTTGGCTCTAGAGTATAGCTCGAAAATGGGAA 1255
|||||||||||||||||||||| |||||||||||| | || || |||| | |||||||||
Sbjct 1181 GTGACCGTTGTAGAACAGAGGGGGCTTCGTTGGCTTTTGATTACAGCTTGGAAATGGGAA 1240
Query 1256 TTCATCTCGAGAAGTCAGCACATCTTGCGTTAATTGGTCATTTTCTGAGAGT-AAACGAG 1314
|||||||| |||||||||| |||| |||||||||||| | ||||||||| | |||||||
Sbjct 1241 TTCATCTCAAGAAGTCAGCGTATCTCGCGTTAATTGGTAACTTTCTGAGA-TCAAACGAG 1299
Query 1315 CTCCCTAAAGTGATTGAAGTGGTCAAGGAAATGCTAAAAGCCCAACACTCGCTTGGTTGT 1374
|| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1300 CTTCCTAAAGTGATTGAAGTGGTCAAGGAGATGGTGAAAGCCCAACACTCGCTTGGTTGT 1359
Query 1375 TACCAAGGAGCAATGTTGATCCACAGGCTGGGGTTTGGGAAAAGACCTCGCTTAGCCGCA 1434
||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 1360 TACCAAGGAGCTATGTTGATCCACAGGCTCGGGTTTGGGAGAAGACCTCGTTTAGCCGCA 1419
Query 1435 GAGGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACACTGCACTGATG 1494
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1420 GACGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACACTGCGCTGATG 1479
Query 1495 GATGTCTACATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTAGGAGAGATGAGA 1554
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1480 GATGTTTATATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTACGAGAGATGAGA 1539
Query 1555 GAGCGAGAGATAATGCCTTCGCTGGGAACATACAATGTTTTGTTGTCTGGTCTTGAGAAA 1614
|||||||||||||||||||| |||| |||||| ||||| | |||||||| |||||||||
Sbjct 1540 GAGCGAGAGATAATGCCTTCTTTGGGGACATACGATGTTCTATTGTCTGGCCTTGAGAAA 1599
Query 1615 ACCAGTGAGTTCCAGAAAGAAGCGGCGTTGTTGAGGAAGGAGAAGAAGATTCTTGTAGCT 1674
|| ||||| |||||||| |||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1600 ACTAGTGATTTCCAGAAGGAAGTGGCGTTGTTGAGGAAGGAGAAGAAGAGTCTTGTTGCT 1659
Query 1675 ACTGCCCGTTTCCGGGAAAATGTTGATGTTGAAGACAAAATATGTGATCTTCTGTTTGCT 1734
|||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1660 TCTGCACGTTTCCGAGAAAATGTTCATGTTGAAGACAAAATATGTGATCTTCTCTTTGCT 1719
Query 1735 ACAAATCTGTTGTAA 1749
|||||||||||||||
Sbjct 1720 ACAAATCTGTTGTAA 1734
> AT2G01360.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:167997-168479 FORWARD LENGTH=483
Length=483
Score = 590 bits (319), Expect = 2e-167
Identities = 424/475 (89%), Gaps = 6/475 (1%)
Strand=Plus/Plus
Query 1247 AAATGGGAATTCATCTCGAGAAGTCAGCACATCTTGCGTTAATTGGTCATTTTCTGAGAG 1306
|||||||||||||||| ||||||||||| ||||||||||| |||| | |||||||||
Sbjct 5 AAATGGGAATTCATCTTGAGAAGTCAGCGTATCTTGCGTTAGCTGGTAACTTTCTGAGA- 63
Query 1307 T-AAACGAGCTCCCTAAAGTGATTGAAGTGGTCAAGGAAATGCTAAAAGCCCAACACTCG 1365
| |||||||||| ||||||||||||| ||||||||||| ||| | ||| |||||||||||
Sbjct 64 TCAAACGAGCTCTCTAAAGTGATTGATGTGGTCAAGGAGATGGTGAAATCCCAACACTCG 123
Query 1366 CTTGGTTGT-TACCAAGGAGCAATGTTGATCCACAGGCTGGGGTTTGGGAAAAGACCTCG 1424
||||| ||| ||||| ||||||||| ||||||||| ||| |||||||||| ||||||| |
Sbjct 124 CTTGG-TGTGTACCATGGAGCAATGCTGATCCACATGCTCGGGTTTGGGAGAAGACCTAG 182
Query 1425 CTTAGCCGCAGAGGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACAC 1484
|||||| ||||||| ||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 183 CTTAGCTGCAGAGGCTTTAGACTTACTTCCGGATGATCAAAAGGGTCTATCTGCTTACAC 242
Query 1485 TGCACTGATGGATGTCTACATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTAGG 1544
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGCGCTGATGGATGTTTATATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTAGG 302
Query 1545 AGAGATGAGAGAGCGAGAGATAATGCCTTCGCT-GGGAACATACAATGTTTTGTTGTCTG 1603
||||||||||||||||||||||||||||||||| |||| ||||| ||||| | |||||||
Sbjct 303 AGAGATGAGAGAGCGAGAGATAATGCCTTCGCTTGGGA-CATACGATGTTCTATTGTCTG 361
Query 1604 GTCTTGAGAAAACCAGTGAGTTCCAGAAAGAAGCGGCGTTGTTGAGGAAGGAGAAGAAGA 1663
||||||||||||||||||| ||||||| |||| | ||| |||||||||||| ||||||
Sbjct 362 GTCTTGAGAAAACCAGTGATTTCCAGAGAGAAACATCGTCATTGAGGAAGGAGCAGAAGA 421
Query 1664 TTCTTGTAGCTACTGCCCGTTTCCGGGAAAATGTTGATGTTGAAGACAAAATATG 1718
|||||| ||| || | ||||||||||||| |||| |||||||||||||||||||
Sbjct 422 GTCTTGTTGCTTCTACACGTTTCCGGGAAATTGTTCATGTTGAAGACAAAATATG 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5