BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg322482 Length=1749 Score E Sequences producing significant alignments: (Bits) Value AT2G01390.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2451 0.0 AT2G01360.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 590 2e-167 > AT2G01390.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:172256-174137 FORWARD LENGTH=1734 Length=1734 Score = 2451 bits (1327), Expect = 0.0 Identities = 1617/1755 (92%), Gaps = 27/1755 (2%) Strand=Plus/Plus Query 1 ATGCGCTTCTCTACCATCTTCCGCAACATCACCCCAACCCAATTCTCCGGTCGCCGGAGC 60 ||||||||||||| |||||||||| | || ||||||| |||||||||| |||||||||| Sbjct 1 ATGCGCTTCTCTAGCATCTTCCGC-A-AT-ACCCCAATCCAATTCTCCAATCGCCGGAGC 57 Query 61 TCCGTCAAGCTACTTCACGCTCTTCCTCGTCCAAAACCGAGAAACCCCACCAACTCCAAG 120 |||||||||||||||||| ||||||||||| | | ||| ||||||||||||||| Sbjct 58 TCCGTCAAGCTACTTCACTCTCTTCCTCGT-------CTA-AAA-CCCACCAACTCCAAG 108 Query 121 CGATTCTTCCAAAAACCCAAACTTGTGAAAACACAGAGCCC-CCCAGATCCAAGGGTTTA 179 ||||||| ||||||||||||||||||||||||||||| ||| |||||||| || ||||| Sbjct 109 CGATTCTCCCAAAAACCCAAACTTGTGAAAACACAGA-CCCTACCAGATCCCAGTGTTTA 167 Query 180 CACAAGAGACATTGTATCCAACATCTATAACATCCTCAAGTACTCCACTTGGGAATCTGC 239 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 168 CACAAGAGACATTGTATCCAACATCTATAACATCCTCAAGTACTCCAATTGGGACTCTGC 227 Query 240 TCAAGAACAGCTCCCACATCTCGGCGTCAGATGGGATTCTCACATTATCAACCGTGTCTT 299 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 TCAAGAACAGCTTCCACATCTCGGCGTCAGATGGGATTCTCACATTATCAACCGTGTCTT 287 Query 300 GAAAGCTCATCCTCCGATGCAGAAAGCTTGGCTCTTTTTCAATTGGGCTTCTCAAATCAA 359 |||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 288 GAAAGCACATCCTCCGATGCAGAAAGCTTGGCTCTTTTTCAACTGGGCTGCTCAAATCAA 347 Query 360 GGGATTCAAACACGACCACTTCACTTACACCACCATGCTCGATATCTTCGGTGAAGCCGG 419 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 348 GGGTTTCAAACACGACCACTTCACTTATACCACCATGCTCGATATCTTCGGAGAAGCCGG 407 Query 420 TCGGATTCAATCCATGTACTCTGTTTTTCACCTTATGAAGGAGAAGGGTGTGTTGATCGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 TCGGATTCAATCCATGTACTCTGTTTTTCACCTTATGAAGGAGAAGGGTGTGTTGATCGA 467 Query 480 TACGGTGACTTATACATCGCTGATTCACTGGGTTTCAAGTTCCGGCGATGTGGATGGAGC 539 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 468 TACGGTGACTTATACATCGCTGATTCACTGGGTTTCAAGCTCCGGTGATGTGGATGGAGC 527 Query 540 AATGAGGTTGTGGGAGGAGATGAGAGATGATGGGTGCGAACCCACCGTCGTATCGTACAC 599 |||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||| Sbjct 528 AATGAGGTTGTGGGAGGAGATGAGAGATAATGGGTGCGAACCTACCGTTGTGTCGTACAC 587 Query 600 TGCTTACATGAAGATACTTTTCGCCGATGGGAGGGTTGAAGAAGCCACGGAGGTGTATAA 659 ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 588 TGCTTACATGAAGATGCTTTTCGCTGATGGGAGGGTGGAAGAAGCCACGGAGGTGTATAA 647 Query 660 GGACATGTTACGGTCGCGAGTTTCTCCGAATTGTCACACTTATACGGTATTGATGGAGTA 719 ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 648 GGAGATGTTACGGTCGCGGGTTTCTCCGAATTGTCACACTTATACTGTATTGATGGAGTA 707 Query 720 TCTTGTTAGC-ACAGGAAAATGTGAGGAAGCCTTAGACATTTTCTTTAAGATGCAAGAAA 778 |||||| || ||||||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 708 TCTTGTC-GCCACAGGAAAATGTGAGGAAGCCTTGGACATATTCTTTAAAATGCAAGAAA 766 Query 779 TTGGGGTTCAGCCAGATAAACCAGCTTGCAATATTCTGATAGTGAAAGC-TTGTAAATTC 837 |||| || |||||||||||| ||||||||||||||||||||| |||||| ||| ||||| Sbjct 767 TTGGTGTGCAGCCAGATAAAGCAGCTTGCAATATTCTGATAGCGAAAGCCTTG-AAATTT 825 Query 838 GGGGAAACATCATTCATGGCTCGAGTTCTTGTATACATGAAAGAGAATGGTGTTGTCCTT 897 ||||||||||| |||||| ||||||||||||| ||||||||||| ||||| |||||||| Sbjct 826 GGGGAAACATCTTTCATGACTCGAGTTCTTGTGTACATGAAAGAAAATGGAGTTGTCCTA 885 Query 898 CGTTACCCTATCTTTCTTGAAGCTTCAGAGACCCTGAAAGCCGCAGGCGAAAGTGATGAT 957 || || ||||||||| ||||||||| |||||| |||||||| |||||||||||||||||| Sbjct 886 CGCTATCCTATCTTTGTTGAAGCTTTAGAGACACTGAAAGCTGCAGGCGAAAGTGATGAT 945 Query 958 CTGTTACGGCAAGTCAACTCGCATATTTCCGCTGAATCTTTGTTGTGCTCCAAAGACATC 1017 |||||| || ||||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct 946 CTGTTAAGGGAAGTCAACTCGCATATTTCCGTTGAATC---GTTGTGCTCCAGTGACATT 1002 Query 1018 GATGAGACTCCAACAACCGAAGTTGATGACACTAACAGTTCAGATGATAGTAGAGTTATC 1077 ||||||||||||||| | |||||| |||||||||| | |||||||||||||||||||||| Sbjct 1003 GATGAGACTCCAACAGCGGAAGTTAATGACACTAAGAATTCAGATGATAGTAGAGTTATC 1062 Query 1078 AGCTCCGTTCTCTTGATGAAGCAGAATCTGGTTGCAGTTGATC-TTATT-CTTAACCAGA 1135 ||||||||||||||||||||||||||||||||||||||||| | || || |||||||||| Sbjct 1063 AGCTCCGTTCTCTTGATGAAGCAGAATCTGGTTGCAGTTGA-CATT-TTACTTAACCAGA 1120 Query 1136 TGATAGATAGGAACATAAAGTTGGATTCTTTTGTTGTTTCAACAATCGTAGAAACAAACT 1195 ||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 1121 TGAGAGATAGGAACATAAAGCTGGATTCTTTTGTTGTTTCAGCAATCATAGAAACAAACT 1180 Query 1196 GTGACCGTTGTAGAACAGAGGGTGCTTCGTTGGCTCTAGAGTATAGCTCGAAAATGGGAA 1255 |||||||||||||||||||||| |||||||||||| | || || |||| | ||||||||| Sbjct 1181 GTGACCGTTGTAGAACAGAGGGGGCTTCGTTGGCTTTTGATTACAGCTTGGAAATGGGAA 1240 Query 1256 TTCATCTCGAGAAGTCAGCACATCTTGCGTTAATTGGTCATTTTCTGAGAGT-AAACGAG 1314 |||||||| |||||||||| |||| |||||||||||| | ||||||||| | ||||||| Sbjct 1241 TTCATCTCAAGAAGTCAGCGTATCTCGCGTTAATTGGTAACTTTCTGAGA-TCAAACGAG 1299 Query 1315 CTCCCTAAAGTGATTGAAGTGGTCAAGGAAATGCTAAAAGCCCAACACTCGCTTGGTTGT 1374 || |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| Sbjct 1300 CTTCCTAAAGTGATTGAAGTGGTCAAGGAGATGGTGAAAGCCCAACACTCGCTTGGTTGT 1359 Query 1375 TACCAAGGAGCAATGTTGATCCACAGGCTGGGGTTTGGGAAAAGACCTCGCTTAGCCGCA 1434 ||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||| Sbjct 1360 TACCAAGGAGCTATGTTGATCCACAGGCTCGGGTTTGGGAGAAGACCTCGTTTAGCCGCA 1419 Query 1435 GAGGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACACTGCACTGATG 1494 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1420 GACGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACACTGCGCTGATG 1479 Query 1495 GATGTCTACATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTAGGAGAGATGAGA 1554 ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1480 GATGTTTATATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTACGAGAGATGAGA 1539 Query 1555 GAGCGAGAGATAATGCCTTCGCTGGGAACATACAATGTTTTGTTGTCTGGTCTTGAGAAA 1614 |||||||||||||||||||| |||| |||||| ||||| | |||||||| ||||||||| Sbjct 1540 GAGCGAGAGATAATGCCTTCTTTGGGGACATACGATGTTCTATTGTCTGGCCTTGAGAAA 1599 Query 1615 ACCAGTGAGTTCCAGAAAGAAGCGGCGTTGTTGAGGAAGGAGAAGAAGATTCTTGTAGCT 1674 || ||||| |||||||| |||| |||||||||||||||||||||||||| |||||| ||| Sbjct 1600 ACTAGTGATTTCCAGAAGGAAGTGGCGTTGTTGAGGAAGGAGAAGAAGAGTCTTGTTGCT 1659 Query 1675 ACTGCCCGTTTCCGGGAAAATGTTGATGTTGAAGACAAAATATGTGATCTTCTGTTTGCT 1734 |||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1660 TCTGCACGTTTCCGAGAAAATGTTCATGTTGAAGACAAAATATGTGATCTTCTCTTTGCT 1719 Query 1735 ACAAATCTGTTGTAA 1749 ||||||||||||||| Sbjct 1720 ACAAATCTGTTGTAA 1734 > AT2G01360.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:167997-168479 FORWARD LENGTH=483 Length=483 Score = 590 bits (319), Expect = 2e-167 Identities = 424/475 (89%), Gaps = 6/475 (1%) Strand=Plus/Plus Query 1247 AAATGGGAATTCATCTCGAGAAGTCAGCACATCTTGCGTTAATTGGTCATTTTCTGAGAG 1306 |||||||||||||||| ||||||||||| ||||||||||| |||| | ||||||||| Sbjct 5 AAATGGGAATTCATCTTGAGAAGTCAGCGTATCTTGCGTTAGCTGGTAACTTTCTGAGA- 63 Query 1307 T-AAACGAGCTCCCTAAAGTGATTGAAGTGGTCAAGGAAATGCTAAAAGCCCAACACTCG 1365 | |||||||||| ||||||||||||| ||||||||||| ||| | ||| ||||||||||| Sbjct 64 TCAAACGAGCTCTCTAAAGTGATTGATGTGGTCAAGGAGATGGTGAAATCCCAACACTCG 123 Query 1366 CTTGGTTGT-TACCAAGGAGCAATGTTGATCCACAGGCTGGGGTTTGGGAAAAGACCTCG 1424 ||||| ||| ||||| ||||||||| ||||||||| ||| |||||||||| ||||||| | Sbjct 124 CTTGG-TGTGTACCATGGAGCAATGCTGATCCACATGCTCGGGTTTGGGAGAAGACCTAG 182 Query 1425 CTTAGCCGCAGAGGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACAC 1484 |||||| ||||||| ||| ||||||||||||||||||||||||||| || |||||||||| Sbjct 183 CTTAGCTGCAGAGGCTTTAGACTTACTTCCGGATGATCAAAAGGGTCTATCTGCTTACAC 242 Query 1485 TGCACTGATGGATGTCTACATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTAGG 1544 ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 243 TGCGCTGATGGATGTTTATATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTAGG 302 Query 1545 AGAGATGAGAGAGCGAGAGATAATGCCTTCGCT-GGGAACATACAATGTTTTGTTGTCTG 1603 ||||||||||||||||||||||||||||||||| |||| ||||| ||||| | ||||||| Sbjct 303 AGAGATGAGAGAGCGAGAGATAATGCCTTCGCTTGGGA-CATACGATGTTCTATTGTCTG 361 Query 1604 GTCTTGAGAAAACCAGTGAGTTCCAGAAAGAAGCGGCGTTGTTGAGGAAGGAGAAGAAGA 1663 ||||||||||||||||||| ||||||| |||| | ||| |||||||||||| |||||| Sbjct 362 GTCTTGAGAAAACCAGTGATTTCCAGAGAGAAACATCGTCATTGAGGAAGGAGCAGAAGA 421 Query 1664 TTCTTGTAGCTACTGCCCGTTTCCGGGAAAATGTTGATGTTGAAGACAAAATATG 1718 |||||| ||| || | ||||||||||||| |||| ||||||||||||||||||| Sbjct 422 GTCTTGTTGCTTCTACACGTTTCCGGGAAATTGTTCATGTTGAAGACAAAATATG 476 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86495539035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5