BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322483

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01400.1 | Symbols:  | unknown protein; Has 19 Blast hits to...   582    7e-166


> AT2G01400.1 | Symbols:  | unknown protein; Has 19 Blast hits 
to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:174271-175617 FORWARD LENGTH=1022
Length=1022

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 403/443 (91%), Gaps = 16/443 (4%)
 Strand=Plus/Plus

Query  1    ATGGCGAGATCGTGCTCAATCTGGACGCCTGTTTTGATCTCACTTTCTCCGA-TAACCGG  59
            ||||||||||||||||| |||||||| |||||||||||||||||||| || | | |||||
Sbjct  45   ATGGCGAGATCGTGCTCTATCTGGACACCTGTTTTGATCTCACTTTCACC-AGTGACCGG  103

Query  60   AGAATCACCTAAATTTTTC-CGGCGCCGGGTGATTTTAGCCACAAGTGTAGGTTCTCCTC  118
            |||||||||||||  |||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct  104  AGAATCACCTAAA-ATTTCACGGCGCCGGGTGATTTTAGCCACAAGTATAGGATCTCCTC  162

Query  119  AGCCTTTACTTGAAGCAAACATTAAGGAACCCCAGAAGCTCCAAGTCCTTGATTCCAAAG  178
            ||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct  163  AGCCTTTACTTGAAGCAAAGATCAAGGAACCTCAGAAGCTTCAAGTCCTTGATTCCAAAG  222

Query  179  ATGTTTCCAGAAGAAACACTATGCTGTATCTAGCCGCTGGATTACTTGGAGGGATCAACA  238
            |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| 
Sbjct  223  ATGTTTCCAGAAGAAACACTATGCTGTATCTAGCTGCTGGATTTCTTGGAGGGATCAACT  282

Query  239  TTCTCCATGGTGAATCCGCAGAAGCTCGAGTAGGGAGAAAGGAGAACAGaaaaaaaGCAC  298
            ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  283  TTCTCAATGGTGAAGCCGCAGAAGCTCGAGTAGGGAGAAAGGAGAACAGAAAGAAAGCAT  342

Query  299  TGGAGAAGCTGAGGGCGAAAGCTAAAGAGTCAGAGCCCAACAACAAGTCAGGAAACCAAA  358
            |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  343  TGGAGAAGCTGAGGGCCAAAGCTAAAGAGTCAGAGCCCAACAACAAGTCAGGTAACCAAA  402

Query  359  AGATAGAGA--GAG--A-AGAA-GTA----T-TT-CCTCTACTTCCTCCACCTCTTGTCG  406
            |||||||||  |||  | |||| | |    | || |||||||||||||||||||||||||
Sbjct  403  AGATAGAGAAAGAGTTAGAGAAAGAAGAAGTGTTTCCTCTACTTCCTCCACCTCTTGTCG  462

Query  407  TGGAAGCTAACTTGCTGCAATAA  429
            | ||||| |||||||| ||||||
Sbjct  463  TTGAAGCAAACTTGCTACAATAA  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5