BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322489
Length=2838
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01460.1 | Symbols: | P-loop containing nucleoside triphosp... 2739 0.0
> AT2G01460.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:206136-211919 FORWARD
LENGTH=3022
Length=3022
Score = 2739 bits (1483), Expect = 0.0
Identities = 1619/1679 (96%), Gaps = 32/1679 (2%)
Strand=Plus/Plus
Query 1161 AGGTGTACCACGCTTGAATACACCTCCACTTTTGCAACCGTCTCCTGTAATCACCAACCA 1220
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1221 AGGTGTACCACGCTTGAATACACCTCCACTTTTGCAACCGTCTCCTGTAATCACTAACCA 1280
Query 1221 AGAGAAGCAAATTGTTGCACCAAAACCTATCCGAACTACCCCAAACATCGTTACCCGCCT 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 AGAGAAGCAAATTGTTGCACCAAAACCTATCCGAACTACCCCAAACATCGTTACCCGCCT 1340
Query 1281 TGAGGATTTATCGCAGCCTTGGACTCGATCTCCTACGAAATCCCAAATGGAACCGATGGT 1340
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1341 TGAGGATTTATCGCAGCCTTGGACTAGATCTCCTACGAAATCCCAAATGGAACCGATGGT 1400
Query 1341 TGCAACTTGGCATTTCACCTCTTATGATCCACCTCATTCAGTAAGCTCTGTAGTAGCCAC 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TGCAACTTGGCATTTCACCTCTTATGATCCACCTCATTCAGTAAGCTCTGTAGT------ 1454
Query 1401 AGATTCCTCTTTCAGGGATAATATGCGGCTTGTTCCTATGCCTGATTCATACGACTTGGA 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 AGATTCCTCTTTCAGGGATAATATGCGGCTTGTTCCTATGCCTGATTCATACGACTTGGA 1514
Query 1461 TAGAGGGTTGCTACTTTCTGTTCAAGCAATACAGGCATTGCTGGAGAATAAAGGACCCCC 1520
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1515 TAGAGGGTTGCTACTTTCTGTTCAAGCAATACAGGCATTGCTGGAGAATAAGGGACCCCC 1574
Query 1521 TGTTATTGTCGGAATAGGTGGTCCTAGTGGGTCTGGTAAGACTAGCTTGGCTCATAAAAT 1580
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 TGTTATTGTTGGAATAGGTGGTCCTAGTGGGTCTGGTAAGACTAGCTTGGCTCATAAAAT 1634
Query 1581 GGCAAATATAGTTGGCTGTGAAGTGGTATCCCTTGAAAGTTACTTCAAGTCCGAACAAGT 1640
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1635 GGCAAATATAGTTGGCTGTGAAGTGGTTTCCCTTGAAAGTTACTTCAAGTCTGAACAAGT 1694
Query 1641 CAAAGATTTCAAGCATGACGATTTTAGTTCCCTTGATTTGCCTTTGCT-TGCAAAGAACA 1699
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 1695 CAAAGATTTCAAGCATGACGACTTTAGTTCCCTTGATTTGCCTTTGCTCT-CAAAGAACA 1753
Query 1700 TTTCCGACATTACAAACGGTCGAAGAACCAAACTGCCTGTATTTGACCTGGAGACTGGCA 1759
||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 1754 TTTCCGACATTACAAACAGTCGAAGAACCAAACTACCTATATTTGATTTGGAGACTGGCA 1813
Query 1760 CCAGATGTGGCTTCAAGGAACTAGAAGTTCCTGAAGAGTGTGGTGTGATCATCTTCGAGG 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 CCAGATGTGGCTTCAAGGAACTAGAAGTTCCTGAAGAGTGTGGTGTGATCATCTTCGAGG 1873
Query 1820 GGGTTTATGCATTGCATCCAGAAATCAGACAATCTTTGGACCTTTGGGTTGCTGTTGTGG 1879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 GGGTTTATGCATTGCATCCAGAAATCAGACAATCTTTGGACCTTTGGGTTGCTGTTGTGG 1933
Query 1880 GAGGTGTTCATTCACATCTTATCTCTAGAGTCCAGAGGGATAAAAGCCGAATCGGGTGTT 1939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 GAGGTGTTCATTCACATCTTATCTCTAGAGTCCAGAGGGATAAAAGCCGAATCGGGTGTT 1993
Query 1940 TCATGTCTCAGAATGAGATAATGATGACTGTATTTCCAATGTTCCAGCAACACATCGAGC 1999
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1994 TCATGTCTCAGAACGAGATAATGATGACCGTATTTCCAATGTTCCAGCAACACATCGAGC 2053
Query 2000 CACATCTAGTGCATGCACACGTTAAGATTCGAAATGATTTTGATCCAGTTCTCTCTCCCG 2059
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 CACATCTAGTGCATGCACATGTTAAGATTCGAAATGATTTTGATCCAGTTCTCTCTCCCG 2113
Query 2060 AGAGCTCTTTGTTTGTTTTGAAGAGCAATAAACAAGTTCCATATCAGGATATTCTCAGCA 2119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 AGAGCTCTTTGTTTGTATTGAAGAGCAATAAACAAGTTCCATATCAGGATATTCTCAGCA 2173
Query 2120 TCCTTGATTCGACAAAATTCTGCAGTTCCGTTCAGAATTTTATCGATATATATTTCAGGC 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2174 TCCTTGATTCGACAAAATTCTGCAGTTCCGTTCAGAATTTTATCGATATATATTTCAGGC 2233
Query 2180 TGTCTGGGCTTCCTGCGAATGGTCAGTTGTCAGATAGTGACTGCATACGCGTAAGAATCT 2239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2234 TATCTGGGCTTCCTGCGAATGGTCAGTTGTCAGATAGTGACTGCATACGCGTAAGAATCT 2293
Query 2240 GCGAGGGCAGGTTTGCAGTTCTTATACGTGAGCCAATTAGGGAAGGGAACTTCATCATTC 2299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 GCGAGGGCAGGTTTGCAGTGCTTATACGTGAGCCAATTAGGGAAGGGAACTTCATCATTC 2353
Query 2300 AGCCCAAAGTAGATTTTGACATTAGCGTAAGTACTGTGGCGGGTCTTCTTAATCTTGGGT 2359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2354 AGCCCAAAGTAGATTTTGACATTAGCGTAAGTACTGTGGCGGGTCTTCTTAATCTCGGGT 2413
Query 2360 ATCAAGCAGTGGCATATATCGAAGCCTCTGCTTTCATTTACCAAGACGGAAAGATTCTGA 2419
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2414 ATCAAGCAGTGGCATATATCGAAGCCTCTGCTTTCATTTACCAAGACGGAAAG-----G- 2467
Query 2420 TTGAGGTTGATCATCTCCAAGATGTGCCAAGTCCATACATACAGATCAAAGGCGCCAACA 2479
| || || | || ||||||||||||||||||||||||||||| ||||
Sbjct 2468 T-GA-----AT---------G-TG--CCAAGTCCATACATACAGATCAAAGGCGCTAACA 2509
Query 2480 AAGAAGCTGTGACGGCTGCTGGTTCAGCTCTCAAACTGGATGGTTCATACACAACAAAGA 2539
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2510 AAGAAGCAGTGACGGCTGCTGGTTCAGCTCTCAAACTAGATGGTTCATACACAACAAAGA 2569
Query 2540 GTTACCTTCAAATAGTGTTGGAAAGACTGCCACCAGTGCAGAGAAGTTCAAGTGGAATCC 2599
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 2570 GTTACCTTCAAATAGTGTTGGAAAGACTGCCACCGGTCCAGAGAAGTTCAAGTGGAATAC 2629
Query 2600 ATACACAGCAAGCAGCGCGGTTGCAAGAGCTTGTGGAATTCATACAATCTCAGGGAAGTA 2659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2630 ATACACAGCAAGCAGCGCGGTTGCAAGAGCTTGTGGAATTCATACAATCGCAGGGAAGTA 2689
Query 2660 GTAACAGTGTGTCGGAATCATCACCAAGAAGAGATGGTTCTTCCATAGACAACGTTTTAG 2719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2690 GTAACAGTGTGTCGGAATCATCACCAAGAAGAGATGGTTCTTCCATAGACAACGTTTTAG 2749
Query 2720 AAGATATGCAATCGAGAATTAAACGACTAGAACGTTGGCACACCATCAATACGGTACTAT 2779
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2750 AAGATATGCAATCAAGAATTAAACGACTCGAACGTTGGCACACCATCAATACGGTACTAT 2809
Query 2780 GGACATTTTTGATGTCTGCGCTCGTTGGTTACTCTCTCTACCAAAGGAAGCGTCAATAA 2838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2810 GGACATTTTTGATGTCTGCGCTCGTTGGTTACTCTCTCTACCAAAGGAAGCGTCAATAA 2868
Score = 1230 bits (666), Expect = 0.0
Identities = 706/726 (97%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 1 ATGGACGACGAGGTTGTTCAGCGAGTTTTCCAAGAAGGAGGACGAGATttcttccagcag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACGACGAGGTTGTTCAGCGAGTTTTCCAAGAAGGAGGACGAGATTTCTTCCAGCAA 60
Query 61 caaccttctacttcttcttcctcttcttcgattcttcaatctcttcctcttcATGTGGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAACCTTCTACTTCTTCTTCCTCTTCTTCGATTCTTCAATCTCTTCCTCTTCACGTGGCT 120
Query 121 TTCGATCATGGCTATTACCTGTTAGTTAAGTCCATTCAAGAGCTTAGAGAGAAGAAGGAC 180
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 TTCGATCATGGCTATTATCTGTTGGTGAAGTCCATTCAAGAGCTTAGAGAGAAGAAGGAC 180
Query 181 GGCATTGTTACTGTTGGTATCGGTGGACCTAGCGGCTCCGGTAAATCCAGCTTGGCAGAG 240
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 181 GGCATTGTTACTGTTGGTATTGGTGGACCTAGCGGCTCTGGTAAATCTAGCTTGGCAGAG 240
Query 241 AAAGTTGCATCTGTAATTGGCTGTACTGTTATTGCAATGGAAGATTACCGAGATAGTTTG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AAAGTTGCATCTGTAATTGGCTGTACTGTTATTGCCATGGAAGATTACCGAGATAGTTTG 300
Query 301 GACGATGGAAATGAATTGGAAACATTAGATTTTGATGCATTAGTCCAGAATCTGGAGGAT 360
|||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 301 GACGATGGTAATGAGTTGGAAACATTAGATTTTGATGCTTTAGTCCAGAATTTGGAGGAT 360
Query 361 TTGATCAAAGGAAAAGATACTCTTGCTCCGGTTTTTGATTTCCAGCAAAAGAAGCGTGTT 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGATCAATGGAAAAGATACTCTTGCTCCGGTTTTTGATTTCCAGCAAAAGAAGCGTGTT 420
Query 421 GATTCCAAGATGGTGAAGACATCATCTGGTGTGGTTATTGTTGATGGGACGTATGCTCTC 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTCCAAGATGGTGAAGACATCCTCTGGTGTGGTTATTGTTGATGGGACGTATGCTCTC 480
Query 481 CATGCAAGATTGCGTTCCTTACTGGATATTCGGGTTGCAGTGGTCGGGGGAGTTCATTTT 540
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 481 CATGCAAGATTGCGTTCCTTACTGGATATTCGGGTTGCAGTGGTTGGGGGCGTTCATTTT 540
Query 541 AGCCTTCTCTCTAAAGTCCGTTATGATATTGGAGATTCGTGTTCGCTTGATTACCTCATC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 AGCCTTCTCTCTAAAGTCCGTTATGATATTGGAGATTCGTGTTCGCTTGATTACCTTATC 600
Query 601 GACAGCATTTTCCCATTGTTTAGAAAGCATATTGAGCCAGATCTCCATCATGCACAGATC 660
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GACAGCATTTTCCCTTTGTTTAGAAAGCATATTGAGCCAGATCTTCATCATGCACAGATC 660
Query 661 AGAATCAACAATAGTTTTGTTTCATCATTTCGGGAAGCCATATACAAATTGAAATGCAAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAATCAACAATAGTTTTGTTTCATCATTTCGGGAAGCCATATACAAATTGAAATGCAAA 720
Query 721 ACTGAG 726
||||||
Sbjct 721 ACTGAG 726
Score = 320 bits (173), Expect = 4e-86
Identities = 184/189 (97%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 974 GAGAGCTTTCAACTGCTGTCAGTTATGGTAATTTATCCCTATCACGTGAAACGATCGATA 1033
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 993 GAGAGC-TTCAACTGCTGTCAGTTATGGTAATTTATCCCTATCACGTGAAACGATTGATA 1051
Query 1034 CTCTTGGAGAGACTTTCCTGGTTCTGAGAGGGACAGATAGGAAGAGTGTGGGAGCTGAAG 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CTCTTGGAGAGACTTTCCTGGTTCTGAGAGGGACAGATAGGAAGAGTGTGGGAGCTGAAG 1111
Query 1094 CTCTGAGAATGGGCATCACTGGGCCCTGGATCACCAAATCATACCTGGAACTGATCCTTG 1153
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1112 CTCTGAGAATGGGCATCACTGGGCCCTGGATCACGAAATCATACCTCGAACTGATCCTTG 1171
Query 1154 AAAGTAAAG 1162
|||| ||||
Sbjct 1172 AAAGCAAAG 1180
Score = 265 bits (143), Expect = 2e-69
Identities = 149/152 (98%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 796 ATGTACCTCAGACCTCCTTCTGCAAGCGAAGAGGCACGGATAAATGACTGGATAAAAGTT 855
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 ATGTACCTCAGACCACCTTCTGCAAGCGAAGAGGCACGGATAAATGACTGGATTAAAGTT 840
Query 856 CGTCAAGCTGGTATAAGGTACTATCTGTCACTTGGAGACCAAAGGATTGTTGACAAGCAT 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGTCAAGCTGGTATAAGGTACTATCTGTCACTTGGAGACCAAAGGATTGTTGACAAGCAT 900
Query 916 TTCATTATCCGGCCGAAAGCTGAGTTTGAGGT 947
|||||||||||||| |||||||||||||||||
Sbjct 901 TTCATTATCCGGCCTAAAGCTGAGTTTGAGGT 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141019276773
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5