BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322499

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01554.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   254    6e-67


> AT2G01554.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G70780.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr2:249687-250181 FORWARD LENGTH=318
Length=318

 Score =  254 bits (137),  Expect = 6e-67
 Identities = 216/251 (86%), Gaps = 18/251 (7%)
 Strand=Plus/Plus

Query  166  GAAG-GCAGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCTACTTTATTGTCCTTA  224
            |||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  80   GAAGTGCTGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCGACTTTATTGCCCTTA  139

Query  225  CTCTGCCTCTGAAGCATTCGATCCATGGGGGAAAATCGGGTCAACCGGATCAAGGAACTT  284
            || || | ||    |  | ||   |  |||||||||||| ||||| ||||||||||||||
Sbjct  140  CTGTG-C-CT----C--T-GA---A--GGGGAAAATCGGTTCAACGGGATCAAGGAACTT  185

Query  285  TGTGTTGTCTAAGAAGTTAGAGACTCAAAAAATTGAAGACTCTGTGATGACAACAACAAT  344
            |||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||| 
Sbjct  186  TGTGTTGTCTAACAAGTTAGAGACTCAAAACCTTGAAGACTCTATGATGACAACAACAAC  245

Query  345  --CC-GGAAGACCTCTGGGAGATGGAAGGCTTGGCTCAACAAGTCTCTTGGCCGTATGAT  401
              || ||||||| || |||||||||||||||||||||||||||||| |||||| |||| |
Sbjct  246  AACCCGGAAGACTTCAGGGAGATGGAAGGCTTGGCTCAACAAGTCTTTTGGCCTTATGGT  305

Query  402  TTCTTCTCATT  412
            | |||||||||
Sbjct  306  TCCTTCTCATT  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5