BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322500

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01560.1 | Symbols:  | Plant protein 1589 of unknown functio...   298    5e-80


> AT2G01560.1 | Symbols:  | Plant protein 1589 of unknown function 
| chr2:250245-251806 REVERSE LENGTH=1053
Length=1053

 Score =  298 bits (161),  Expect = 5e-80
 Identities = 213/236 (90%), Gaps = 12/236 (5%)
 Strand=Plus/Plus

Query  517  ATTTTGAAGCAGATTTCAACTAGAATACGACTGCTTGAGAGTATCATAGAACAAGTTCAC  576
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  637  ATTTTGAAGCAGATTTCAACTAGAATGCGACTGCTTGAGAGTATCATAGAACAAGTACAC  696

Query  577  AAAATACTGAGTAATGTACTTGGACCACCT-CGT-T-CTGCT---G----C--GAAACAG  624
            ||| |||| ||||||||||||||||||||| | | | |||||   |    |  |||||||
Sbjct  697  AAACTACTTAGTAATGTACTTGGACCACCTCCTTCTGCTGCTAAAGCCCTCAAGAAACAG  756

Query  625  CGATCATGGAAACAAGTGAGAGGTGATTATGAACAAGCAGAGATGCTTCAGGATCTGAAT  684
             ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  757  AGATCATGGAAACAAGTGAGAGGTGATTATGAACAAGCAGAGATGCTTCATGATCTGAAT  816

Query  685  CAACAAGTCCAACAAGAAATGACGAGAATGGACATCCCGCGAAATCAAGCCAGCGA  740
            ||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||
Sbjct  817  CAACAAGTCCAACAAGAAATGCCGAGAATGGACATCCCGGGGAATCAAGCTAGCGA  872


 Score =  278 bits (150),  Expect = 7e-74
 Identities = 314/385 (82%), Gaps = 44/385 (11%)
 Strand=Plus/Plus

Query  64   GAAGAAACTGCGAATTTTATATTCGATACATTTGGAGTCCCACATAAA-TTTACCAGATT  122
            ||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct  109  GAAGAAACTGCGAGTTTTATATTCGATACATTTGGAGTCTCAC-TAAAGTTTACCAGATT  167

Query  123  AATTTGGTATCTTCTTGAAAAAGCAAATCCACATTTCTTCAGCTGTTTCAAAAGACATTG  182
              ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct  168  TGTTTGGTATCTTCTTGAAAAAGCAAATCCAGATTTCTTCAGATGTTTCAAAACACATTG  227

Query  183  TGAGAATATTCGGAATGCACCAAGTGAAGAAGTAACGTCGCATGCTCAAACAAGACAATC  242
             |||||||||| |||||||||||||||||||||||||||   |    ||    |    | 
Sbjct  228  CGAGAATATTCAGAATGCACCAAGTGAAGAAGTAACGTC---T----AAT---G----T-  272

Query  243  AAATGTTGAGATTGAAACTTCTTTAGAAGATTTAGCAGAGGCAAGTACAAGCTTCACAAA  302
            |   |   ||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct  273  A---G---AGATTGAAAATTCTTTTGAAGATTTAGCAGAGGCAAGTACAAGCTTTACAAA  326

Query  303  ATCAGATAACAAACCTAGAGCAAAGCGTTTAAAGGCTCGAAAGGCGGA-AGA-GAAACAA  360
            | ||||||||||||||||||||||||||| |||||   ||||     | ||| | |||| 
Sbjct  327  ACCAGATAACAAACCTAGAGCAAAGCGTTCAAAGGG--GAAAAATAAACAGAAGCAACAT  384

Query  361  C-AA---C----A---A--CT--GA-CAGAGACTGCTCCAAATGATGCATCATCACAAGT  404
            | ||   |    |   |  ||  || | ||||||||||||||||||||||||||||||||
Sbjct  385  CCAATTTCTCCTATTCATTCTTTGATC-GAGACTGCTCCAAATGATGCATCATCACAAGT  443

Query  405  GTCTCAAGAATCTGCTACTACTAAT  429
            | |||||||| | |||||| |||||
Sbjct  444  GCCTCAAGAAGCAGCTACTGCTAAT  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37022566339


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5