BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg322500 Length=762 Score E Sequences producing significant alignments: (Bits) Value AT2G01560.1 | Symbols: | Plant protein 1589 of unknown functio... 298 5e-80 > AT2G01560.1 | Symbols: | Plant protein 1589 of unknown function | chr2:250245-251806 REVERSE LENGTH=1053 Length=1053 Score = 298 bits (161), Expect = 5e-80 Identities = 213/236 (90%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 517 ATTTTGAAGCAGATTTCAACTAGAATACGACTGCTTGAGAGTATCATAGAACAAGTTCAC 576 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 637 ATTTTGAAGCAGATTTCAACTAGAATGCGACTGCTTGAGAGTATCATAGAACAAGTACAC 696 Query 577 AAAATACTGAGTAATGTACTTGGACCACCT-CGT-T-CTGCT---G----C--GAAACAG 624 ||| |||| ||||||||||||||||||||| | | | ||||| | | ||||||| Sbjct 697 AAACTACTTAGTAATGTACTTGGACCACCTCCTTCTGCTGCTAAAGCCCTCAAGAAACAG 756 Query 625 CGATCATGGAAACAAGTGAGAGGTGATTATGAACAAGCAGAGATGCTTCAGGATCTGAAT 684 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 757 AGATCATGGAAACAAGTGAGAGGTGATTATGAACAAGCAGAGATGCTTCATGATCTGAAT 816 Query 685 CAACAAGTCCAACAAGAAATGACGAGAATGGACATCCCGCGAAATCAAGCCAGCGA 740 ||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||| Sbjct 817 CAACAAGTCCAACAAGAAATGCCGAGAATGGACATCCCGGGGAATCAAGCTAGCGA 872 Score = 278 bits (150), Expect = 7e-74 Identities = 314/385 (82%), Gaps = 44/385 (11%) Strand=Plus/Plus Query 64 GAAGAAACTGCGAATTTTATATTCGATACATTTGGAGTCCCACATAAA-TTTACCAGATT 122 ||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||| Sbjct 109 GAAGAAACTGCGAGTTTTATATTCGATACATTTGGAGTCTCAC-TAAAGTTTACCAGATT 167 Query 123 AATTTGGTATCTTCTTGAAAAAGCAAATCCACATTTCTTCAGCTGTTTCAAAAGACATTG 182 ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| Sbjct 168 TGTTTGGTATCTTCTTGAAAAAGCAAATCCAGATTTCTTCAGATGTTTCAAAACACATTG 227 Query 183 TGAGAATATTCGGAATGCACCAAGTGAAGAAGTAACGTCGCATGCTCAAACAAGACAATC 242 |||||||||| ||||||||||||||||||||||||||| | || | | Sbjct 228 CGAGAATATTCAGAATGCACCAAGTGAAGAAGTAACGTC---T----AAT---G----T- 272 Query 243 AAATGTTGAGATTGAAACTTCTTTAGAAGATTTAGCAGAGGCAAGTACAAGCTTCACAAA 302 | | ||||||||| |||||| ||||||||||||||||||||||||||||| ||||| Sbjct 273 A---G---AGATTGAAAATTCTTTTGAAGATTTAGCAGAGGCAAGTACAAGCTTTACAAA 326 Query 303 ATCAGATAACAAACCTAGAGCAAAGCGTTTAAAGGCTCGAAAGGCGGA-AGA-GAAACAA 360 | ||||||||||||||||||||||||||| ||||| |||| | ||| | |||| Sbjct 327 ACCAGATAACAAACCTAGAGCAAAGCGTTCAAAGGG--GAAAAATAAACAGAAGCAACAT 384 Query 361 C-AA---C----A---A--CT--GA-CAGAGACTGCTCCAAATGATGCATCATCACAAGT 404 | || | | | || || | |||||||||||||||||||||||||||||||| Sbjct 385 CCAATTTCTCCTATTCATTCTTTGATC-GAGACTGCTCCAAATGATGCATCATCACAAGT 443 Query 405 GTCTCAAGAATCTGCTACTACTAAT 429 | |||||||| | |||||| ||||| Sbjct 444 GCCTCAAGAAGCAGCTACTGCTAAT 468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37022566339 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5