BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322516
Length=2460
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage... 2769 0.0
AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogen... 726 0.0
> AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage
and polyadenylation specificity factor 73 kDa subunit-II
| chr2:320478-323947 FORWARD LENGTH=2063
Length=2063
Score = 2769 bits (1499), Expect = 0.0
Identities = 1619/1678 (96%), Gaps = 3/1678 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATCGATTGTCTCGTACTCGGTGCTGGACAAGAGATTGGAAAGAGCTGTGTGGTA 60
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGGCTATCGATTGTCTCGTACTTGGTGCTGGACAAGAGATTGGAAAGAGCTGTGTGGTA 179
Query 61 GTGACGATTAATGGTAAAAGGATAATGTTCGATTGTGGGATGCATATGGGCTGCGATGAT 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 GTGACGATTAATGGTAAAAAGATAATGTTCGATTGTGGGATGCATATGGGCTGTGATGAT 239
Query 121 CACAATCGTTACCCAGATTTTTCTCTCGTCTCTAAATCCGGTGATTTTGATAACGCGATC 180
||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 240 CACAATCGTTACCCAAATTTTTCTCTCATATCTAAATCCGGTGATTTTGACAACGCGATC 299
Query 181 TCTTGTATCATCATCACTCACTTCCATATGGATCATGTTGGAGCGCTTCCTTACTTCACG 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTGTATCATCATCACACACTTCCATATGGATCATGTTGGAGCGCTTCCTTACTTCACG 359
Query 241 GAAGTTTGTGGGTACAATGGCCCGATTTATATGTCGTATCCCACAAAGGCTTTGTCTCCA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGTTTGTGGGTACAATGGTCCGATTTATATGTCGTATCCCACAAAGGCTTTGTCTCCA 419
Query 301 TTAATGCTTGAGGACTACCGAAGAGTGATGGTTGATAGAAGAGGTGAGGAGGAGCTATTC 360
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 420 TTAATGCTTGAGGACTACCGAAGAGTGATGGTGGATAGAAGAGGCGAGGAGGAGCTATTC 479
Query 361 ACCACTACCCATATCGCAAACTGCATGAAGAAAGTAATTGCAATAGATTTGAAGCAAACA 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 ACCACTACCCATATCGCAAACTGCATGAAAAAAGTAATTGCAATAGATTTGAAGCAAACA 539
Query 421 ATTCAGGTTGACGAAGATCTTCAAATCCGTGCCTATTACGCAGGGCATGTCCTTGGAGCA 480
||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 540 ATTCAGGTTGATGAAGATCTTCAAATCCGGGCTTATTATGCAGGGCATGTCCTTGGAGCA 599
Query 481 GTGATGGTTTATGCAAAGGTTGGAGATGCAGCGATTGTGTACACTGGAGATTACAATATG 540
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGATGGTTTATGCAAAGATGGGAGATGCAGCGATTGTGTACACTGGAGATTACAATATG 659
Query 541 ACGACAGATAGACATCTAGGAGCAGCTAAAATTGACAGACTCCAGTTGGATCTTCTCATA 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 ACGACAGATAGACATCTAGGAGCTGCTAAAATTGACAGACTCCAGTTGGATCTTCTCATT 719
Query 601 TCAGAGTCCACATATGCAACTACCATTCGTGGCTCAAAATATCCCCGGGAGAGAGAGTTT 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TCAGAGTCCACATATGCAACTACCATTCGCGGCTCAAAATATCCCCGGGAGAGAGAGTTT 779
Query 661 CTTCAAGCTGTTCATAAATGTGTTGCTGGCGGAGGGAAGGCGCTGATTCCTTCATTTGCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTCAAGCTGTTCATAAATGTGTTGCTGGCGGAGGGAAGGCGCTGATTCCTTCATTTGCT 839
Query 721 CTTGGAAGGGCTCAGGAACTCTGCATGCTGCTTGATGATTACTGGGAGCGCATGAATATA 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 CTTGGAAGGGCTCAGGAACTCTGCATGCTGCTTGATGATTACTGGGAACGCATGAATATA 899
Query 781 AAGGTTCCAATTTACTTCTCATCAGGTTTGACCATCCAAGCAAATATGTATTACAAAATG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGGTTCCAATTTACTTCTCATCAGGTTTGACCATCCAAGCAAATATGTATTACAAAATG 959
Query 841 CTCATCAGCTGGACAAGCCAGAACGTTAAAGAAAAGCACAATACACATAACCCATTTGAT 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 CTCATCAGCTGGACAAGCCAGAACGTTAAAGAAAAGCACAATACGCATAACCCATTTGAT 1019
Query 901 TTTAAGAATGTTAAAGATTTTGATCGATCTCTTATACATGCTCCTGGGCCATGTGTTCTC 960
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTAAGAATGTTAAAGATTTCGATCGATCTCTTATACATGCTCCTGGGCCATGTGTTCTC 1079
Query 961 TTTGCCACACCCGGTATGCTTTGTGCCGGCTTCTCACTTGAAGTGTTCAAGCACTGGGCT 1020
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1080 TTTGCCACACCTGGTATGCTTTGTGCTGGCTTTTCACTTGAAGTGTTCAAGCACTGGGCT 1139
Query 1021 CCATCTCCCCTGAATCTTGTTGCCTTGCCCGGATACTCTGTGGCTGGAACAGTTGGGCAC 1080
|| |||||| ||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct 1140 CCTTCTCCCTTGAATCTTGTTGCATTACCCGGATACTCTGTGGCTGGGACCGTTGGGCAC 1199
Query 1081 AAACTGATGTCTGGTAAACCCACGACGGTTGATCTCTACAATGGCACCAAGGTCGATGTC 1140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAACTGATGGCTGGTAAACCCACGACGGTTGATCTCTACAATGGCACCAAGGTCGATGTC 1259
Query 1141 CGTTGCAAGATACATCAAGTGGCATTCAGTCCTCACACAGATGCAAAAGGAATAATGGAT 1200
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 CGTTGCAAGGTACATCAAGTGGCTTTCAGTCCTCACACAGATGCAAAAGGAATAATGGAT 1319
Query 1201 CTCACAAAGTTCCTTTCCCCAAAGAACGTTGTACTCGTGCACGGCGAAAAACCCAGCATG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTCACAAAGTTCCTTTCCCCAAAGAACGTTGTACTCGTGCACGGCGAAAAACCCAGCATG 1379
Query 1261 ATGATTCTTAAGGATAAGATAACCTCAGAGCTTGACATCCCCTGTTTCGTCCCTGCCAAT 1320
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATGATTCTTAAGGAAAAGATAACCTCAGAGCTTGACATCCCCTGTTTCGTCCCTGCCAAT 1439
Query 1321 GGCGAAACAGTTTCAGTAGCTTCAACCACTTATATAAAAGCAAACGCTTCTGATATGTTC 1380
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGCGAAACAGTTTCATTCGCTTCAACCACTTATATAAAAGCAAACGCTTCTGATATGTTC 1499
Query 1381 CTTAAAAGCTGCTCCAGCCCGAATTTCAAATTCTCAAACTCTACTCAGCTCCGTGTTACA 1440
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CTAAAAAGCTGCTCCAACCCGAATTTCAAATTCTCAAACTCTACTCAGCTCCGTGTTACA 1559
Query 1441 GATCAGAGAACAGCAGACGGCGTTTTGGTCATAGAGAAGAGCAAAAAGGCAAAGATAGTT 1500
|| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1560 GACCATAGAACCGCAGACGGGGTTTTGGTAATAGAGAAGAGCAAAAAGGCAAAGATAGTT 1619
Query 1501 CACCAAGATGAAGTCTCTGAGGTGTTACATGAGAAAAACCATGTGGTCTCTTTGGCTTAT 1560
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1620 CACCAAGATGAAATCTCTGAGGTGTTACATGAGAAAAACCATGTGGTCTCTTTAGCTCAT 1679
Query 1561 TGTTGTCCTGTGAAAGTCAAGGGAGAATCAGAT-A--ATGATGCTGATCTGATCAAACAA 1617
|||||||| |||||||| || ||||||||||| | |||||| |||||| |||||||||
Sbjct 1680 TGTTGTCCAGTGAAAGTTAAAGGAGAATCAGAAGATGATGATGTTGATCTAATCAAACAA 1739
Query 1618 TTGTCTGCAAAGATCTTGAAGACAGTGTCTGGTGCTCAGATCCATGAATCTGAAAACT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TTGTCTGCAAAGATCTTGAAGACAGTGTCTGGTGCTCAGATCCATGAATCTGAAAACT 1797
> AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogenesis
| chr2:324472-326094 FORWARD LENGTH=1306
Length=1306
Score = 726 bits (393), Expect = 0.0
Identities = 465/498 (93%), Gaps = 12/498 (2%)
Strand=Plus/Plus
Query 1698 TTCTTCAGATTCCACGGCGGCGCGTGATCAACATGCGCCGCTTCTCCGTTCACGTCACGA 1757
||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||
Sbjct 39 TTCTTCAGATTCCACGGCGGCGCGTGATCAACATGCGCCTCTACTCCGTCCACGACACGA 98
Query 1758 CGGAtcttcttcttcttcttcttcttcATCAACAGCCCGACCTACAGCTCTCGCCGTTCT 1817
||| | |||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 99 CGG--C-TCTTTTTCTTCTTCTTCTTCAT---CAGCCAGACCTACAGCTCTCGCCGTTCT 152
Query 1818 ATTAGGCCGGATCACCGGTCACCGTGCACCGTCGATGCTGGTTAGAGAAACGGCGGCGCG 1877
|||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 153 ATTAGGACGGATCACCGGCCACCGAGCACCGTCGATGCTGGTTAGAGAAACAGCGGCGCG 212
Query 1878 TGCTCTCGAGGAAAGACGAATCGATTGGGGTTACTCGAAGCCTGTAGTTGCTGCTGATAT 1937
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TGCTCTCGAGGAGAGACGAATCGATTGGGGTTACTCGAAGCCTGTAGTTGCTGCTGATAT 272
Query 1938 ACTATGGAACGCTGCTTTAGTGCTTGCGTCGGCGGTTATGCTTGTCGGTACCGTTGAAGA 1997
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 273 ACTATGGAACGCTGCTTTAGTTCTTGCGTCAGCGGTTATGCTTGTCGGTACCGTTGAAGA 332
Query 1998 AAGACCTAATGAACCAATTAGGGTTTGGATCTGTGGGTATGGGTTACAGTGTTTGATCCA 2057
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 333 AAGACCTAATGAACCGATTAGGGTTTGGATCTGTGTGTATGGGTTACAGTGTTTGTTCCA 392
Query 2058 TGTGGTTTTGGTTTGGTCTGAGTATTGGAGAAGAAACACAACTCGTCGAGCTAGGGATTT 2117
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 393 TGTGGTTTTGGTTTGGTCTGAGTATTGGAGAAGAAACTCAACTCGTAGAGCTAGGGATTT 452
Query 2118 GGAGTCTGGTGATCATGAAGATTACAG--T-GAGTATGATTATGAACAAGACAGTGA--- 2171
||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 453 GGAGTCTTATGATCATGAAGATTACAACATTGAGTATGATTATGAACAAGACAGTGATGA 512
Query 2172 CAATTCAACAACTTACAG 2189
||||||||||||||||||
Sbjct 513 CAATTCAACAACTTACAG 530
Score = 339 bits (183), Expect = 1e-91
Identities = 213/228 (93%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 2184 TTACAGGTTGTCGGTGATTTTTCTGGCGATTGATGTCTTCTTTGCTATTTTCTGTGTTGT 2243
|||| |||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 645 TTACTGGTTATCGGTGATTTTCCTGGCGATTGACGTCTTCTTTGCTGTTTTCTGTGTTGT 704
Query 2244 TTTGGCTTGCCTTGTTGGAATAGCTCTCTGCTGCTGTCTTCCTTGCATAATCGCTCTTCT 2303
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 705 TTTGGCTTGCCTTGTTGGAATAGCTCTTTGTTGCTGTCTTCCTTGCATAATTGCTCTTCT 764
Query 2304 TTATGCCGTTGCAGGAACGGAAGGAGTATCAGAGGCTGAGCTCGGTGTTCTTCCCCTGTA 2363
|||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||| ||||
Sbjct 765 TTATGCCGTTGCTGGAACGGAAGGTGTATCGGAGGCGGAGCTCGGTGTTCTTCCCTTGTA 824
Query 2364 CAAATTTAAGGCTTTCCATAGCAACGAGAAGAACATTACCGGACCTGG 2411
|||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 825 CAAATTTAAGGCTTTCCATAGCAATGAGAAGAACATTACTGGACCTGG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122056172319
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5