BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322531
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01905.1 | Symbols: CYCJ18 | cyclin J18 | chr2:410327-415330... 1064 0.0
> AT2G01905.1 | Symbols: CYCJ18 | cyclin J18 | chr2:410327-415330
FORWARD LENGTH=2604
Length=2604
Score = 1064 bits (576), Expect = 0.0
Identities = 664/707 (94%), Gaps = 4/707 (1%)
Strand=Plus/Plus
Query 1 ATGTCTACAGAGATCGGTCATCTTCGTCGGAGATTGGTCGAGTTCTTGATTCAATCTACT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 47 ATGTCTACAGAGATCGGTCATCTTCGTCGGAGATTAGTCGAGTTCTTGATTCAATCTACT 106
Query 61 ACTCAACTTGAACTTCCTCCGATCGTTAAATACTCAGCTCTATCGCTCTTCTTTGATCGA 120
|||| ||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 107 ACTCTACTCGAACTTCCTCCGATCGTTAAATATTCAGCTCTATCGCTATTCTTCGATCGA 166
Query 121 TTTCGTCCAAATGTAGTCAGGTTTTTACAGAAAAAGAAAGCAGAACATTGGCTATTGCAA 180
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TTTCGTCCTAATTTAGTCAGGTTTTTACAGAAAAAGAAAGCAGAACATTGGCTATTGCAA 226
Query 181 CCTTTGACTGAGAGCAATCTGCAGTTATTTGTGTTAATCTCCATTTGGATCTCATGTAAA 240
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CCTTTGAATGAAAGCAATCTGCAGTTATTTGTGTTAATCTCCATTTGGATCTCATGTAAA 286
Query 241 ATGCATTGTACCCGAGGTTTATCGGTTCATAGTCTT-AAATCCTTTGGGGATATTGTGAT 299
||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 287 ATGCATTGTACACGAGGTTTATCGGTTCATAGT-TTGAAATCCTTTGGGGATAAAGTGAT 345
Query 300 TACAGAGCAACTCTTCATGGTTCGCGATTTCTTAGATGCGGAACTAATTTTTCTGAAGGT 359
||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 346 TACTGAGCAACTCTTCATGGTTCGCGATTTCTTGGATGCAGAACTGGTTTTTCTGAAGGT 405
Query 360 TTTGAAGTTTGAGATAGGCACTCTAAATATAGCTTATACACTGCTTGAAGACCTTTTTAT 419
| |||| |||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 406 TCTGAAATTTGAGATTGGCACTCTAAATATAGCTTATACACGGCTTGAAGATCTTCTTAT 465
Query 420 TCAGTTCAAAGAAGTTGCAAAAGTTGGGGATCATTTGAACTTTGAAGCGTGTATGGACAT 479
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 466 TCAGTTCAAAGAAGTTGCAAAAGTTGGGGAACAGTTGAACTTTGAAGCATGTATGGACAT 525
Query 480 GATGGACCTTCTTTACGAAAAAGAGGAGACATCCCTTCTTTA-CAGATATTCAAAATCTC 538
|||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||
Sbjct 526 GATGGATCTTCTTTACGAGAAAGAGGACACATCCCTTCTTTATCA-ATCTTCAAAATCTC 584
Query 539 TGGCTGCTTCCATTTTGGTCTCTTCTTACATAATAACAGTGCCTAAACAGCAGTATGAAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 585 TGGCTGCTTCCATTTTGGTCTCTTCTTACATAATAACAGTGCCTAAACAGCAGTACGAAT 644
Query 599 TCCCTATCCTCCCCTGGGTTAAAATGGTGACAAATATGGAAGAAAAGGAAGTGGTGGAGC 658
||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 645 TCCCTATTCTCCCCTGGGTTAAAATGGTGACAAATAAGGAAGAAAGGGAGGTGGTGGAGC 704
Query 659 TTGTTGGATACATACTTTCTCATTTCCTTTACTCGAACTCTCCTTAA 705
|||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 705 TTGTTGAATACATACTTGCTCATGTCCTTTACTCGAACTCTCCTTAA 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5