BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322553
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02147.1 | Symbols: LCR73 | low-molecular-weight cysteine-ri... 366 4e-101
> AT2G02147.1 | Symbols: LCR73 | low-molecular-weight cysteine-rich
73 | chr2:546664-547026 FORWARD LENGTH=243
Length=243
Score = 366 bits (198), Expect = 4e-101
Identities = 226/240 (94%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTCTCTTTGCGTTTTCTCTCAGTCCTTCTCCTCATCTCTTTCATGGTTCTTGCT 60
|||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGAAGCTCTCTCTGCGTTTTCTCTCAGTCCTTCTCCTGATCGCTTTCATGGTTCTTGCT 60
Query 61 ACCACTGCAGAGGTGAGTCCGGTGGATAACAAAATATGTAAGACACGGAGTGATCGTTTC 120
||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||
Sbjct 61 ACCACTGCAGAGGTGAGTCCGTTGGATAATAAAATATGCAAGACAAGGAGTGATCGTTTC 120
Query 121 TCAGGGGTGTGCTTGAGCACTAACAATTGTGCTATCATCTGCCAACAATTCGAGCACTTT 180
||||| |||||| | ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCAGGAGTGTGCATAAGCACAAACAATTGTGCCATCATCTGCCAACAATTCGAGCACTTT 180
Query 181 GATGGCGGTCACTGCGAATTCGACGGAGCCCTCCGTCGTTGTATGTGCACCAAACAATGT 240
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 181 GATGGCGGTCACTGCGAATTCGATGGAGCCTTCCGTCGTTGTATGTGCACCAAACAATGT 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5