BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322556
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02170.1 | Symbols: | Remorin family protein | chr2:556493-... 2222 0.0
> AT2G02170.1 | Symbols: | Remorin family protein | chr2:556493-558798
REVERSE LENGTH=1652
Length=1652
Score = 2222 bits (1203), Expect = 0.0
Identities = 1393/1482 (94%), Gaps = 24/1482 (2%)
Strand=Plus/Plus
Query 1 ATGGATTACGAACGAATCGGAAAGACCCAGGTTACTACTACTAGCGGCGGTGGATTTTCT 60
||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||
Sbjct 90 ATGGATTACGAACGAATCGGAAAGACCCAGG-T--TACTAGTAGCGGCGGCGGATTTTCT 146
Query 61 CCGGGGAAGTTAAGAAGTATGCTTCTTCTTGGTGTTGATAGAAAGAAGAAT---GAAGAA 117
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 147 CCGGGGAAGTTAAGGAGTATGCTTCTTCTAGGTGTTGATAGAAAGAAGAATGAAGAAGAA 206
Query 118 GAATCTACTCCTACAATGAGATCTGGGTCTAATCAAATTGATGACCCTAGGGTTTATGTT 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GAATCAACTCCTACAATGAGATCTGGGTCTAATCAAATTGATGACCCTAGGGTTTATGTT 266
Query 178 GCTAGTGGATTAGATGATTGCAAAGATGTTGATGTTGTGAGTGAAATTACTGATTGTTCT 237
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 267 GCTAGTGGATTAGATGATTGCAAAGATGTTGATGTTGTGAGTGAGATTACTGATTGTTCT 326
Query 238 GCTTCTGGGATTGCTAGATCGATTAGTTTGGGTCTTCAAGAGTATCCGAGTCTTGATTAT 297
|||| ||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 327 ACTTCAGGGATAGCTAGATCGATTAGTTTGGGTCTTCAAGAGTAT-----TC-TGATTAT 380
Query 298 GAGAATGTGAATGAGATTAAGAGTGTTTCTGCTTCATCTGTCTTTGAGTTTCAAAAGACT 357
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 381 GATAATGTGAATGAGATCAAGAGTGTTTCTGCATCATCTGTCTTTGAGTTTCAAAAGACT 440
Query 358 GAGAAGGAAAAGGCTAATCAAAGAATGCCTATTAGATCGTTCTCTAAACCAGCTCCATCT 417
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 441 GAGAAGGAAAAAGTTAATCAAAGAATGCCTATTAGATCATTCTCTAAACCAGCTCCATCT 500
Query 418 AAATGGGATGATGCTCAGAAATGGATTGCTAGCCCAACGGCTAACCGACCAAAGACTGGA 477
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 501 AAATGGGATGATGCTCAGAAATGGATTGCTAGTCCTACGGCTAACCGACCGAAGACTGGA 560
Query 478 CAGGTTCAGGTTCCGGGGTCGAAGAAAGGGCCAAGCTTTGGTCGCCAGTCTTCTATGAAG 537
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 561 CAGGTTCAGGTTCCGGGTTCGAAGAAAGGGCCTAGCTTTGGTCGTCAGTCTTCTATGAAG 620
Query 538 ATTGTTGAAGTTGCTGATCAAAGAGCGGGTGTATTCGCGGTTGAAGAGCCTGATACAAAG 597
||||||||||||||||| || ||| | | ||||||||||||||||||||||
Sbjct 621 ATTGTTGAAGTTGCTGAACATAGA------G---T---GGTTGAAGAGCCTGATACAAAG 668
Query 598 CGGATAGATGTAAGCCAAGTGAAAAAGGATATGGGAAACAAGTTTGTTAGCTGGGAAGTC 657
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 669 AGAATAGATGTAAGCCAAGTGAAAAAGGATATGGGAAACAAGTTTGGTAGCTGGGAAGTT 728
Query 658 GATTCATACACTACCGCGGATTCATATGTTAAACCGGTTCTTATGGTTGAGAACTCTATT 717
||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 729 GATTCGTACACTACCGTGGATTCATATGTCAAACCGGTTCTTATGGTTGAGAACTCTATT 788
Query 718 GTAGAATCAGCAACTGAAGTTAATCTCAGTCGACATGACTCATCAGTCGCAACTGGGTTT 777
||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||
Sbjct 789 GTAGAATCAGCAACTGAAGTTAATCTCAGCCGTCATGACTCGTCAGTCGCAACTGCGTTT 848
Query 778 GCCCAACCGCCTTCAACAGCAAGATCTGTATCGATGAGAGACATGGGAACCGAAATGACT 837
|| |||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||
Sbjct 849 GCTCAACCGCCTTCAACGGCAAGGTCTGTGTCAATGAGAGACATGGGAACTGAAATGACT 908
Query 838 CCTATAGCGAGCCAAGAACCTTCTAGAAACGGGACACCAATCAGGGCAACAACGCCAATC 897
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 909 CCTATAGCGAGCCAAGAACCTTCTAGAAACGGGACACCGATTAGGGCAACAACGCCAATA 968
Query 898 CGAAGTCCTATATCTTCTGAACCTTCAAGTCCAGGGAGACAAGCTTCAGCTTCTCCTATG 957
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 969 CGAAGTCCTATATCTTCTGAACCTTCAAGTCCAGGCAGACAAGCATCAGCTTCTCCTATG 1028
Query 958 ACTAACAAGGAACTGTCGGAGAAAGAGCTTCAAATGAAAACTAGGAGAGAGATAATGGTG 1017
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AGTAACAAGGAACTGTCAGAGAAAGAGCTTCAAATGAAAACTAGGAGAGAGATAATGGTG 1088
Query 1018 TTAGGTACTCAACTTGGTAAATTAAACATTGCTGCTTGGGCTAGCAAAGAGGATGAAGAT 1077
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1089 TTGGGTACTCAACTTGGTAAATTTAACATTGCTGCTTGGGCTAGCAAGGAGGATGAAGAT 1148
Query 1078 AAAGACGCTTCCACATCACTAAAGACCAAAGCTTCTCTACAAACTTCTAAAAGTGTTTCT 1137
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AAAGACGCATCCACATCATTAAAGACCAAAGCTTCTCTACAAACTTCTAAAAGTGTTTCT 1208
Query 1138 GAATCTCGTGCTACCGCGTGGGAGGAAGCGGAAAAAGCTAAGCACATGGCTAGGTTCAGA 1197
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GAAGCTCGTGCTACAGCGTGGGAGGAAGCGGAAAAAGCTAAGCACATGGCTAGGTTCAGA 1268
Query 1198 CGCGAAGAGATGAAGATTCAAGCATGGGAGAATCATCAGAAGGCGAAATCTGAAGCCGAG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CGCGAAGAGATGAAGATTCAAGCATGGGAGAATCATCAGAAGGCGAAATCTGAAGCCGAG 1328
Query 1258 ATGAAGAAAACCGAGGTGGAAGTTGAGAGGATTAAGGGACGAGCGCAAGACCGGTTGATG 1317
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1329 ATGAAGAAAACCGAGGTTAAAGTTGAGAGGATTAAGGGACGAGCACAAGACCGGTTGATG 1388
Query 1318 AAGAAACTAGCTGCGATCGAGCGCAAGGCAGAGGAGAAGCGAGCAGCGGCTGAAGCAAAG 1377
|||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1389 AAGAAACTCGCTACAATCGAGCGCAAAGCAGAGGAAAAGCGAGCAGCGGCTGAAGCAAAG 1448
Query 1378 AAGGATCGTCAAGCAGCTAAAACAGAGAAACAAGCTGAACAAATCCGAAGAACAGGCAAA 1437
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 AAGGATCATCAGGCAGCTAAAACAGAGAAACAAGCTGAACAAATCCGAAGAACAGGCAAA 1508
Query 1438 GTACCTTCATTGTTGTCCTCTTGCTTTAGCTTTTGTTCTTAA 1479
|||||||||||||||| |||||||||||||||||||||||||
Sbjct 1509 GTACCTTCATTGTTGTTCTCTTGCTTTAGCTTTTGTTCTTAA 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5