BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322561
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:5923... 1214 0.0
AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2 |... 704 0.0
AT2G02310.1 | Symbols: AtPP2-B6, PP2-B6 | phloem protein 2-B6 |... 357 1e-97
> AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:592359-593602
REVERSE LENGTH=963
Length=963
Score = 1214 bits (657), Expect = 0.0
Identities = 816/890 (92%), Gaps = 22/890 (2%)
Strand=Plus/Plus
Query 63 TTTTCCCAAATACACACGATTTGATCAAAGGCACCGATCGATGATGGGGCAAAATCATGG 122
|||| | ||| ||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 88 TTTT-CGAAACACAAACGATTTGATCAAAGGCACCGATCGATGATGGGGC--AAT-AT-- 141
Query 123 CATTATTGAATCTAGCGGTGGAGAGATCGTTGT-TCCCGGGTCGTCACCTTTTGATGTCT 181
| | ||||||||||||||||||| | ||| ||| ||||||||||||||||||
Sbjct 142 C--------A--TAGCGGTGGAGAGATCGTT-TCTCCGGGGACGTCACCTTTTGATGTCT 190
Query 182 TGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGAAGCGTGCGTTG 241
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 191 TGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGTTG 250
Query 242 CTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAATTCCGATAGCGTATGGGACAAGT 301
||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 251 CTGCATCGGTTTCCAAAACCTTTGAATCAGCTGTTAGTTCCGATTGCGTATGGGACAAGT 310
Query 302 TTCTTCCGCCGGATTATTCATCTCTGGTTTCTC-AGTCTCGAGTTTTCGCATCGAAGAAG 360
||||||| ||||| ||| |||| ||||||||| | ||||||||||| ||||||||||||
Sbjct 311 TTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGA-TCTCGAGTTTTTGCATCGAAGAAG 369
Query 361 GAGCTTTATTTCGCTCTCTGCCACAATCATGTTCTGATTGAAGATGGCAAAAAGAGCTTT 420
|| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 370 GAACTTTATTTCGCTCTCTGCCACAATCCTGTTCTAATCGAAGATGGCAAAAAGAGCTTT 429
Query 421 TGGTTAGAGAAAGCGAGTGGGAAAAGGTGTATTATGTTATCTTCAAAGGAACTTTGGATC 480
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 430 TGGTTAGAAAAAGCGAGTGGAAAAAGGTGTATCATGTTATCTTCAAAGGAACTTTGGATC 489
Query 481 ACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTTCAGTTCCTGAATCTAGATTTGA- 539
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 490 ACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGAATCTAGATTCAAC 549
Query 540 AAAAGTAGCAGAGCTTCTTAATGTATGTTGGTTTGAGATTCGGGGCAAGACAAGCACTCG 599
|||| |||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||
Sbjct 550 AAAA-TAGCAGAGCTTCTTGATGTGTGTTGGTTTGAGATTCGTGGCAAGACAAGCGCTCG 608
Query 600 TTTATTATCTCCTGGAACTCGTTACTCGGCTTACATTGTTTTCAAGACGAATGATGGATG 659
| | |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 609 TGTGCTATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAAGACGAAAGATCGATG 668
Query 660 TCCTGGATTAGGGCATTTGCCGGTAGAAGTTGGACTTGGTTTGGTGGGACAAGAATCTTC 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 669 TCCTGGATTAGGGCATTTGCCGGTAGAAGTTGGACTTGGTTTAGTGGGACAAGAATCTTC 728
Query 720 CAAAAGGTTCATATACTTCGTTGGACCTAGGAACCGAAGGAGAGGGAGGGAAACGAGAGA 779
||||| |||||||| ||| | || |||||| | |||||| || ||||||||||||||||
Sbjct 729 TAAAAGATTCATATATTTCATAGGGCCTAGGGATCGAAGGGGAAGGAGGGAAACGAGAGA 788
Query 780 TGTAACGAAACCAGAGCAGAGAGAAGATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTT 839
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TGTAACAAAACCAGATCAAAGAGAAGATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTT 848
Query 840 CAATGAAGAAAGTTGTGATGAAATTGAGTTTAGTGTTATTGAGATTAAGTCTCCTTCTTG 899
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 849 CAATGAAGAAAGGTGTGATGAAATTGAGTTTAGTGTTATTGAGATTAAGTCCCCTTCTTG 908
Query 900 GAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAAAGCC 949
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAAAGCC 958
> AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2
| chr2:594655-595852 REVERSE LENGTH=960
Length=960
Score = 704 bits (381), Expect = 0.0
Identities = 712/866 (82%), Gaps = 45/866 (5%)
Strand=Plus/Plus
Query 105 GATGGGGCAAAATCATGGCATTATTGAATCTAGCGGTGGAGAGATCGTTGTTCCCGGGTC 164
||||| |||||| ||| | | ||||||||||||| |||| ||| | | |||| |
Sbjct 105 GATGGTGCAAAAACATAG-A--GTTGAATCTAGCGGAGGAGCTATC-AT-CT-CCGGACC 158
Query 165 GTCACCT-TTTGATGTCTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTC 223
|||| || || ||| ||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 159 GTCA-CTGTTCGATAACTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTC 217
Query 224 CACGAGAAGCGTGCGTTGCTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAATTCCG 283
| || || || |||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 218 CTCGTGACGCTTGCGTTGCAGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCCG 277
Query 284 ATAGCGTATGGGACAAGTTTCTTCCGCCGGATTATTCATCTCTGGTTTCTC-AGTCTCGA 342
||||||||||||||||||||||||| |||||||||||||||| ||| ||| | ||||||
Sbjct 278 ATAGCGTATGGGACAAGTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCA-TCTCGA 336
Query 343 GTTTTCGCATCGAAGAAGGAGCTTTATTTCGCTCTCTGCCACAATCATGTTCTGATT-GA 401
|||||| |||||||||||||||| ||||||||| | ||| |||||| |||||| | | ||
Sbjct 337 GTTTTCTCATCGAAGAAGGAGCTCTATTTCGCTATATGCGACAATCCTGTTCT-AGTCGA 395
Query 402 AGATGGCAAAAAGAGCTTTTGGTTAGAGAAAGCGAGTGGGAAAAGGTGTATT-ATGTTAT 460
||||||| ||||||||| ||||||||||||| || |||||||| |||| || |||||||
Sbjct 396 AGATGGCGGAAAGAGCTTCTGGTTAGAGAAAGAGAATGGGAAAAAGTGT-TTCATGTTAT 454
Query 461 CTTCAAAGGAA-CT-T-TGGATCACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTT 517
|| | ||| || || | ||||||||||||| |||| |||| | ||||||| ||||||||
Sbjct 455 CTCCGAAGAAATCTATGTGGATCACATGGGTTAGTACTCCTCAGTATTGGCGATGGATTT 514
Query 518 C-AGTTCCTGAATCTAGATTTGAAAAAGTAGCAGAGCTTCTTAATGTATGTTGGTTTGAG 576
| | |||||||| |||| |||||| ||||| ||||||| || ||||| ||||||||||||
Sbjct 515 CGA-TTCCTGAAGCTAGGTTTGAAGAAGTACCAGAGCTGCTCAATGTGTGTTGGTTTGAG 573
Query 577 ATTCG-GGGC-AA-GACAAGCACTCGTTTATTATCTCCTGGAACTCGTTACTCGGCTTAC 633
| || ||| || || | ||| | ||||||||||||| |||||||||||||||
Sbjct 574 GTCCGAGGGGGAATGA-AT--ACTAAAGAACTATCTCCTGGAACCCGTTACTCGGCTTAC 630
Query 634 ATTGTTTTCAAGACGAATGA-TGGATGTCCTGGATTAGGGC-ATTTGCCGGTAGAAGTTG 691
||||| |||||||| || || |||||||||| ||| ||| || |||| ||||||| |
Sbjct 631 ATTGTGTTCAAGACAAA-GAATGGATGTCCTA-ATTTGGGGGATGTGCCAGTAGAAGCT- 687
Query 692 GACT-T-GGTTTGGTGGGACAAGAATCTTC-CAAAAGGTTCATATACTTCGTTGGACCTA 748
||| | || |||||||||||||||||||| |||| | ||||||||| ||||| |||
Sbjct 688 -ACTGTTGGATTGGTGGGACAAGAATCTTCTCAAA-GACACATATACTTTGTTGGGCCTT 745
Query 749 -GGAACCGAAGGAGAGGGAGGGAAACGAGAGATGTAACGAAACCAGAGC-AGA-GAGAAG 805
||| | |||||||| || ||||||||||||||||||| |||| | | | | || |||
Sbjct 746 CGGATCA-AAGGAGAGACAGAGAAACGAGAGATGTAACGAGACCA-A-CTAAAAGAAAAG 802
Query 806 ATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTTCAATGAAGAAAG-TTGTGATGAAATT 864
|||| ||||||||||||||||||||| ||||||||||||| | || |||||||| ||
Sbjct 803 ATGGTTGGATGGAAGCTGAGCTTGGTCAATTCTTCAATGA-GTCAGGTTGTGATGTTGTT 861
Query 865 GAGTTTAGTGTTATTGAGATTAAGTCTCCTTCTTGGAAGAGTGGTTTGATCATTCAAGGA 924
|| ||| || ||||||||||| |||||| ||||||| | ||||||||||||||||||
Sbjct 862 GACACAAGTATTCTTGAGATTAAGACTCCTTATTGGAAGCGCGGTTTGATCATTCAAGGA 921
Query 925 ATCGAATTCCG-CCCTACGAAAAGCC 949
||||||||||| ||| || |||||||
Sbjct 922 ATCGAATTCCGTCCC-ACCAAAAGCC 946
> AT2G02310.1 | Symbols: AtPP2-B6, PP2-B6 | phloem protein 2-B6
| chr2:608759-610130 REVERSE LENGTH=924
Length=924
Score = 357 bits (193), Expect = 1e-97
Identities = 629/832 (76%), Gaps = 60/832 (7%)
Strand=Plus/Plus
Query 137 GCGGTGGAGAGATCGTTGTTCCCGGGTC-GTCACCTTTTGATGTCTTGCCGGAGGATTGC 195
|||| ||||||||| || ||| |||| || || ||||||| ||||||||||||||||
Sbjct 101 GCGGGGGAGAGATC---GTACCC-GGTCATTCGCCGTTTGATGACTTGCCGGAGGATTGC 156
Query 196 ATCTCCAACATAATCTCTTTCACAAGTCCACGAGAAGCGTGCGT-TGCTGCATCGGTTTC 254
|||||||||||||||||||| ||||||||||| || | ||| || | | || || |||||
Sbjct 157 ATCTCCAACATAATCTCTTTTACAAGTCCACGGGACGTGTGTGTCT-CCGCTTCAGTTTC 215
Query 255 AAAAACCTTTG-A-ATCGGCTGTTAATTCCGATAGCGTATGGGACAAGTTTCTTCCGCCG 312
|||| |||| | | || || || | | ||||| ||||||| |||||||||||| ||
Sbjct 216 AAAATCCTTCGCACAT--GCGGTCCAGTGTGATAGTATATGGGAGAAGTTTCTTCCGTCG 273
Query 313 GATTATTCATCTCTGGTTTCTCAGTCTCGAGTTTTCGCATCGAAGAAGGAGCTTTATTTC 372
|| ||| ||| ||| || ||| || ||||||||| ||||||||||||| || ||||||
Sbjct 274 GAGTATGAATCCCTGATTCCTCCGTGGCGAGTTTTCTCATCGAAGAAGGACCTCTATTTC 333
Query 373 GCTCTCTGCCACAATCATGTTCTGA-TTGAAGATGGCAAAAAGAGCTTTTGGTTAGAGAA 431
|||| ||| || ||| |||||| | |||| ||||||||||||||||||||||||||||
Sbjct 334 ACTCTTTGCTACGATCCTGTTCT-AGTTGAGGATGGCAAAAAGAGCTTTTGGTTAGAGAC 392
Query 432 AGCGAGTGGGAAAAGGTGTATTA-TGTTATCTTCAAAGGAACTTTGGATCACATG-GGGA 489
|| |||||||||| |||| | | ||||| || |||||||||| ||||||||| | ||||
Sbjct 393 GGCAAGTGGGAAAAAGTGTGT-ACTGTTAGCTGCAAAGGAACTGTGGATCACAGGAGGGA 451
Query 490 AGTAGTCCTGAATATTGGCAATGGATTTCAGTTCCTGAATCTAGATTTGAAAAAGTAGCA 549
| || |||||| ||||||||||||||| | || ||||||||| |||||||| ||| ||
Sbjct 452 A-TAATCCTGAGTATTGGCAATGGATTGAACTTTGTGAATCTAGTTTTGAAAAGGTACCA 510
Query 550 GAGCTTCTTAATGTAT-GTTGGTTTG-AGATTCGG-GGCAAG-ACAAGCACTCGTTTATT 605
|||||||| ||| || ||| ||| |||| || || | | | || || | | ||
Sbjct 511 GAGCTTCTCAATA-ATCGTTC-TTTCCAGATG-GGTGGTA-GTATGAGTACCCAAATCTT 566
Query 606 ATCTCCT-GGAACTCGTTACTCGGCTTACATTGTTTTCAAGACGAATGATGGATGTCCTG 664
||| ||| ||||||| ||| || | ||||||||| | ||||| || |||| | ||| ||
Sbjct 567 ATC-CCTAGGAACTCATTATTCAGTTTACATTGTGTACAAGATAAAAGATGAACGTCATG 625
Query 665 GATTAGG-GCATTTGCCGGTAGAAGTTGGACTTGG-TTTGGTGGGACAAGAATCTTCC-A 721
| ||| | | ||||||| || ||||||| | || ||| || |||||| | || |
Sbjct 626 GCTTACGAG-ATTTGCCTATACAAGTTGGTGTAGGATTTAAAGGC-CAAGAAA-TGCCTA 682
Query 722 AA-AGGTTCATATACTTCGTTG-G---ACCTAGGAA-CCGAAGGAGAGGGAGGGAAACGA 775
|| | ||||||| ||| | | | ||| | || || || |||| | | ||| ||
Sbjct 683 AACAA-TTCATATGCTTTGACGAGTCTACCGATAAAACC-AA--AGAGTG-GCCAAA-GA 736
Query 776 GAGATG-TAACGAAACCAGAGCAGAGAGAAGATGGGTGGATGGAAGCTGAGCTTGGTGAA 834
||| | ||| |||| || || |||| | ||||||||||||||| || ||| |||| ||
Sbjct 737 -AGAAGCTAATGAAATCAAAGAAGAGGGGAGATGGGTGGATGGAGGCAGAGATTGGGGAT 795
Query 835 TTCTTCAATGA---AG-A--AA-G--TTGTGATGAAATTGA-GTTTAGTGTTATTGA-GA 883
||||||||||| || | || | || ||||||| |||| || ||| || | || |
Sbjct 796 TTCTTCAATGATGGAGGATTAATGGGTTTTGATGAAGTTGAAGTG-AGTATTGTAGACG- 853
Query 884 TTAAGTCTCCTTCTTGGAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCG 935
||| || ||| || |||| ||||| |||| ||| ||||||| ||||||||
Sbjct 854 TTACTTCACCTAATTTGAAGTGTGGTGTGATGATTGAAGGAATTGAATTCCG 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5