BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322562
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2 |... 1055 0.0
AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:5923... 686 0.0
> AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2
| chr2:594655-595852 REVERSE LENGTH=960
Length=960
Score = 1055 bits (571), Expect = 0.0
Identities = 800/908 (88%), Gaps = 26/908 (3%)
Strand=Plus/Plus
Query 1 ATGGGGCACAAACAAAGCGTTGACTCCACAGGGAAAGG-CAAAGAAGTGGCCGGTTCTTC 59
||||| |||||||||||||||||||| | ||| ||||| | || |||| ||||||||||
Sbjct 43 ATGGGACACAAACAAAGCGTTGACTCTAGAGGCAAAGGCCGAA-AAGTTCCCGGTTCTTC 101
Query 60 GTCGATGATGCTAAAACACGGCGTTGAATCT--------AG----------CGGACCGTC 101
||||||| ||| |||||| | ||||||||| || |||||||||
Sbjct 102 GTCGATGGTGCAAAAACATAGAGTTGAATCTAGCGGAGGAGCTATCATCTCCGGACCGTC 161
Query 102 GCTGTTCGATAACTTACCGGAAGATTGCATTTCCAACATAATCTCTTTCACAAGTCCACG 161
|||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||
Sbjct 162 ACTGTTCGATAACTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCG 221
Query 162 AGATGCGTGCGTTGCTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAGTTCCGATAG 221
|| || |||||||| || |||||||| |||||||||||||||||||||| |||||||||
Sbjct 222 TGACGCTTGCGTTGCAGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCCGATAG 281
Query 222 CGTATGGGACAAGTTTCTTCCGCCGGATTATTCATCTCTAATTCCTCCAT-TGCGAGTTT 280
||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||
Sbjct 282 CGTATGGGACAAGTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCATCT-CGAGTTT 340
Query 281 TTTCATCGAAGAAGGAGCTCTATTTCGCTATATGCGATAATCCTGTGT-TAATCGACGAT 339
| ||||||||||||||||||||||||||||||||||| |||||||| | || |||| |||
Sbjct 341 TCTCATCGAAGAAGGAGCTCTATTTCGCTATATGCGACAATCCTGT-TCTAGTCGAAGAT 399
Query 340 GGTAAAAAGAGCTTCTGGTTAGAGAAAGGGAATGGGAAAAAGTGTATCATGTTATCTCCG 399
|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 400 GGCGGAAAGAGCTTCTGGTTAGAGAAAGAGAATGGGAAAAAGTGTTTCATGTTATCTCCG 459
Query 400 AAGAAAGATATGTGGATCACATGGGTTAGTACTCCCCAATATTGGCGATGGATTTCAATT 459
|||||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 460 AAGAAATCTATGTGGATCACATGGGTTAGTACTCCTCAGTATTGGCGATGGATTTCGATT 519
Query 460 CCTGAAGCTAGGTTTGAAGAAGTACCAGAGCTTCTCAATGTGTGTTGGTTTGAGGTCCGA 519
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 520 CCTGAAGCTAGGTTTGAAGAAGTACCAGAGCTGCTCAATGTGTGTTGGTTTGAGGTCCGA 579
Query 520 GGGGGCATGAGTACTAAATACCTATCGCCTAGAACTCGTTACTCGGCTTACATTGTGTTC 579
||||| |||| ||||||| | ||||| ||| |||| ||||||||||||||||||||||||
Sbjct 580 GGGGGAATGAATACTAAAGAACTATCTCCTGGAACCCGTTACTCGGCTTACATTGTGTTC 639
Query 580 AAGACAAAGGATAGATGTCCTAATTTGGGGGATGTGCCAGCAGAAGCTACAGTCGGATTG 639
||||||||| || ||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 640 AAGACAAAGAATGGATGTCCTAATTTGGGGGATGTGCCAGTAGAAGCTACTGTTGGATTG 699
Query 640 GTGGGACAAGCATCATCTCAAAGATTCATTTACTTTGTTGGGCCTACGAATCGAGGgaga 699
|||||||||| ||| ||||||||| ||| ||||||||||||||| || ||| | |||||
Sbjct 700 GTGGGACAAGAATCTTCTCAAAGACACATATACTTTGTTGGGCCTTCGGATCAAAGGAGA 759
Query 700 gagagagaAACGAGAGTTGTAACGAAACCAACGGAGAGAAAAGATGGATGGATGGAAGCT 759
|| ||||||||||||| |||||||| |||||| | ||||||||||| ||||||||||||
Sbjct 760 GACAGAGAAACGAGAGATGTAACGAGACCAACTAAAAGAAAAGATGGTTGGATGGAAGCT 819
Query 760 GAGCTTGGTGAATTCTTCAATGAATCAAGTTGTGATGAGGTTG-CAACAAGTATTCTTGA 818
||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||||||||
Sbjct 820 GAGCTTGGTCAATTCTTCAATGAGTCAGGTTGTGATGTTGTTGACA-CAAGTATTCTTGA 878
Query 819 GACTAAGTCTCCTTATTGGAAGCGTGGTTTGATCATTCAAGGAATCGAATTCCGACCTAC 878
|| |||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 879 GATTAAGACTCCTTATTGGAAGCGCGGTTTGATCATTCAAGGAATCGAATTCCGTCCCAC 938
Query 879 GAAAAGCC 886
|||||||
Sbjct 939 CAAAAGCC 946
> AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:592359-593602
REVERSE LENGTH=963
Length=963
Score = 686 bits (371), Expect = 0.0
Identities = 659/794 (83%), Gaps = 35/794 (4%)
Strand=Plus/Plus
Query 114 CTTACCGGAAGATTGCATTTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGT 173
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGT 248
Query 174 TGCTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAGTTCCGATAGCGTATGGGACAA 233
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 249 TGCTGCATCGGTTTCCAAAACCTTTGAATCAGCTGTTAGTTCCGATTGCGTATGGGACAA 308
Query 234 GTTTCTTCCGCCGGATTATTCATCTCTAATTCCTCCAT-TGCGAGTTTTTTCATCGAAGA 292
||||||||| ||||| ||| |||| | || ||| || | ||||||||| |||||||||
Sbjct 309 GTTTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGATCT-CGAGTTTTTGCATCGAAGA 367
Query 293 AGGAGCTCTATTTCGCTATATGCGATAATCCTGTGT-TAATCGACGATGGTAAAAAGAGC 351
|||| || ||||||||| | ||| | |||||||| | ||||||| ||||| |||||||||
Sbjct 368 AGGAACTTTATTTCGCTCTCTGCCACAATCCTGT-TCTAATCGAAGATGGCAAAAAGAGC 426
Query 352 TTCTGGTTAGAGAAAGGGAATGGGAAAAAG-TGTATCATGTTATCTCCGAAGAAAGATAT 410
|| |||||||| |||| || ||| |||||| ||||||||||||||| | ||| || | |
Sbjct 427 TTTTGGTTAGAAAAAGCGAGTGG-AAAAAGGTGTATCATGTTATCTTCAAAGGAAC-T-T 483
Query 411 GTGGATCACATGGGTTAGTACTCCCCAATATTGGCGATGGATTTCAATTCCTGAAGCTAG 470
||||||||||||| |||| ||| ||||||||| ||||||||||||||||||| ||||
Sbjct 484 -TGGATCACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGAATCTAG 542
Query 471 GTTTGA-AGAAGTACCAGAGCTTCTCAATGTGTGTTGGTTTGAGGTCCGAGGGG-G-CAT 527
|| | | || || |||||||||| ||||||||||||||||| | || || | ||
Sbjct 543 ATTCAACAAAA-TAGCAGAGCTTCTTGATGTGTGTTGGTTTGAGATTCGTGGCAAGACAA 601
Query 528 GAG-TAC-TAAATACCTATCGCCTAGAACTCGTTACTCGGCTTACATTGTGTTCAAGAC- 584
| | | | | | | |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 602 GCGCT-CGTG--TGC-TATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAAGACG 657
Query 585 AAAGGATAGATGTCCTA-ATTTGGGGGATGTGCCAGCAGAAGCTACAGTCGGATTGGTGG 643
|||| || |||||||| ||| ||| || |||| | ||||| | | | || || ||||
Sbjct 658 AAAG-ATCGATGTCCTGGATTAGGGC-ATTTGCCGGTAGAAGTTGGACTTGGTTTAGTGG 715
Query 644 GACAAGCATCATCTCAAAGATTCATTTACTTTGTT-GGGCCTACGAATCGA-GGgagaga 701
|||||| ||| ||| |||||||||| || ||| | ||||||| | ||||| ||| || |
Sbjct 716 GACAAGAATCTTCTAAAAGATTCATATA-TTTCATAGGGCCTAGGGATCGAAGGG-GA-A 772
Query 702 g-agagaAACGAGAGTTGTAACGAAACCA-A-CGGAGAGAAAAGATGGATGGATGGAAGC 758
| || |||||||||| |||||| |||||| | | |||||| ||||| |||||||||||
Sbjct 773 GGAGGGAAACGAGAGATGTAACAAAACCAGATCAAAGAGAA--GATGGGTGGATGGAAGC 830
Query 759 TGAGCTTGGTGAATTCTTCAATGAATCAAGTTGTGATGAGGTTGCAACA-AGTATTCTTG 817
||||||||||||||||||||||||| ||| |||||||| ||| | ||| || |||
Sbjct 831 TGAGCTTGGTGAATTCTTCAATGAAGAAAGGTGTGATGAAATTG-AGTTTAGTGTTATTG 889
Query 818 AGACTAAGTCTCCTTATTGGAAGCGTGGTTTGATCATTCAAGGAATCGAATTCCGACCTA 877
||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 890 AGATTAAGTCCCCTTCTTGGAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTA 949
Query 878 CGAAAAGCCAGTAA 891
||||||||||||||
Sbjct 950 CGAAAAGCCAGTAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5