BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322563
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02340.1 | Symbols: AtPP2-B8, PP2-B8 | phloem protein 2-B8 |... 1171 0.0
AT2G02360.1 | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B1... 547 6e-155
AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2 |... 283 2e-75
> AT2G02340.1 | Symbols: AtPP2-B8, PP2-B8 | phloem protein 2-B8
| chr2:616088-617274 REVERSE LENGTH=918
Length=918
Score = 1171 bits (634), Expect = 0.0
Identities = 837/932 (90%), Gaps = 25/932 (3%)
Strand=Plus/Plus
Query 1 ATGACCAAAACAAAGTTCATGCATGAGCATTTTCGT-AAATTGGTACAACGACTTAAGAA 59
||||||||||||| || ||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1 ATGACCAAAACAAGGTGCATGCATGAGCATTTTCGTAAAATT-GTACAACGAGTTAAGAA 59
Query 60 GACTCTTACACTCTCAGCTTCCGACAAAAGTCACGGCGTTGCTGCTACGTTGTCTTTGGA 119
|||||||| ||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 60 GACTCTTAGACTCTCAGCTTCCGACAAAAGTCACGGCGTTGCTG--A----G---TTGGA 110
Query 120 TGACTTACCGGAAGAATGTATCTCCATCATAATCTCTTTCACAAGTCCTCTAGATGCGTG 179
||||||||||||||||||| |||| |||||| ||||||||||||| |||| |||||||||
Sbjct 111 TGACTTACCGGAAGAATGTGTCTCAATCATAGTCTCTTTCACAAGCCCTCAAGATGCGTG 170
Query 180 CGTCCTTGCTTCCGTTTCGAAAACCTTTGAATCGGCGGCCAAGCCAGATATCGTATGGGA 239
|||||||||||| |||||||||||||||| ||||||| |||| ||||||| ||||||||
Sbjct 171 CGTCCTTGCTTCGGTTTCGAAAACCTTTGCTTCGGCGGTCAAGTCAGATATTGTATGGGA 230
Query 240 GAAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGATTTC---T-C-- 293
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 231 GAAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGCTTTCAAATTCTT 290
Query 294 ATCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACGAATCTGTTCTAATCGACGATGGCAA 353
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 291 ATCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACAAATCTGTTCTAATTGACGATGGCAA 350
Query 354 AAAGTTTCT-ATGGTTAGAGAAAGCGAATGCAAAGAGGTGTATCATGTTATCAGAGATGT 412
|||| || |||| |||| |||||||| || ||||| ||||||||| |||||| ||||
Sbjct 351 AAAGAG-CTTATGGATAGAAAAAGCGAACGCGAAGAGATGTATCATGATATCAGCGATGA 409
Query 413 ACCTCT-CAATCACTTGGGGAAATTATCCTCAGAGTTGGCAATGGATTCCAGATCCTCAA 471
|||| | ||||| | ||||| |||| |||||||||||||| |||||||||||||||||||
Sbjct 410 ACCT-TGCAATCGCGTGGGGGAATTCTCCTCAGAGTTGGCGATGGATTCCAGATCCTCAA 468
Query 472 GCTAGGTTTGAAACAGTAGCGGAGCTACTTGGAGTATGTTTGTTTGAGATTCGTGGCAGA 531
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 469 GCTAGGTTTGAAACAGTAGCGGAGCTACTTGAAGTATGTTTGTTTGAGATTCGTGGCAGA 528
Query 532 ATAAATAGT--TGCAACCTATCTCCAAGAACTCGTTACTCGGCTTACATTATGTTCAGGA 589
||||||||| || | ||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 529 ATAAATAGTCGTGTGA--TATCTCCAAAAACTCGTTACTCGGCTTACATTGTGTACAAGA 586
Query 590 AAAAGGATATATGTTATGGCTTTGAGAATGTGGCTGTAGAAGTTGTAGTAGGATTGGTGG 649
|| | ||||||||||||||||||||||||| || |||||||||||||| ||| ||||||
Sbjct 587 AATTGAATATATGTTATGGCTTTGAGAATGTAGCCGTAGAAGTTGTAGTTGGAGTGGTGG 646
Query 650 GACAGGATTTAGAAGAGTCTTGTCCAAGATATGTATGCTTTGATGAGGCTACCGATGAGC 709
| |||||||||||||| ||||||| ||||||| |||||||||||||| ||| |||||||
Sbjct 647 GGCAGGATTTAGAAGAATCTTGTCGAAGATATATATGCTTTGATGAGACTATGGATGAGC 706
Query 710 AGTTTCGATGGAGAGACAGGGGAAAGAACATAGTGAAACCAGAGTGGAGAAAAGATGGGT 769
|||||||| ||||||| |||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 707 AGTTTCGAAGGAGAGATAGGGGAAAGAACCTAGTAAAACCAGAGAGGAGAAAAGATGGGT 766
Query 770 GGATGGAGATAAAGCTTGGGGAGTTCTTCAATGAAGGAGGATTATTGAACTATGATGAAA 829
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 767 GGATGGAGATAAAGATTGGGGAATTCTTCAATGAAGGAGGATTATTGAACGATGATGAAA 826
Query 830 TTGAGATGGTTGCTTTAGAGAATAAGCAGCGCCATTGGAAACGTGGCTTGATCATTGGAG 889
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||
Sbjct 827 TTGAGATGGTTGCTTTAGAGGCTAAGCAGCGTCATTGGAAACGTGGCTTGATCATTCAAG 886
Query 890 GAATTGAAATCCGTCTTGCGAATATCCAGTAA 921
||||||||||||||| | ||||||||| ||||
Sbjct 887 GAATTGAAATCCGTCCTACGAATATCCGGTAA 918
> AT2G02360.1 | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10
| chr2:619406-620768 REVERSE LENGTH=1144
Length=1144
Score = 547 bits (296), Expect = 6e-155
Identities = 646/806 (80%), Gaps = 59/806 (7%)
Strand=Plus/Plus
Query 127 CCGGAAGAATGTATCTCCAT-CATAATCTCTTTCACAAGTCCTCTAGATGCGTGCGTC-C 184
|||||||| || |||||| | |||||||||||| |||| ||| | |||||||||||| |
Sbjct 84 CCGGAAGATTGCATCTCC-TACATAATCTCTTTTACAAATCCACGCGATGCGTGCGTCGC 142
Query 185 TTGCTTCCGTTTCGAAAACCTTTGAATCGGCGGCCAAGCCAGATATCGTATGGGAGAAGT 244
|||| | ||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||
Sbjct 143 -TGCTACGGTTTCGAAAACGTTTGAATCGACGGTGAAGTCAGATATTATATGGGAGAAGT 201
Query 245 TTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGATTTCTCATCGAAGAAGG 304
|| ||||| | || ||||||||| ||||| ||| ||| |||| |||||||||||||||||
Sbjct 202 TTCTTCCGGCGGATTATGAATCTCTGATTCCTCCATCGCGAGTTTTCTCATCGAAGAAGG 261
Query 305 AGCTCTATTTCGCTCTTTGCGACGAATC-TGTTCTAATCGACGATGGCAAAAAGTTTC-T 362
||||||||||| |||| || |||| || ||||||| ||||||||| ||||||| | |
Sbjct 262 AGCTCTATTTCTCTCTCTGTAACGA-TCCTGTTCTATTCGACGATGACAAAAAGAG-CGT 319
Query 363 ATGGTTAGAGAAAGCGAATGCAAAGAGGTGTATCATGTTATCAGAGATGTACCTCTCAAT 422
||||||||||||||||| || ||||||||| | |||||||| | |||| ||||||||||
Sbjct 320 ATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTCTGATGTTATCTGCGATGAACCTCTCAAT 379
Query 423 CACT-TGGGGAAATTATCCTCAG-AGTTGGCAATGGATTCCAGAT-CCTCAAGCTAGGTT 479
|| | |||||| || |||||||| | |||||||||||||||| || ||| || |||||||
Sbjct 380 CA-TATGGGGAGATAATCCTCAGTA-TTGGCAATGGATTCCA-ATTCCTGAATCTAGGTT 436
Query 480 TGAAACAGTAGCGGAGCTACTTGGA-GTATGTTTGTTTGAGATTCGTGGCAGAATAAATA 538
||||| ||||||| | || | | | ||||||| ||| |||||||||||||||| ||||
Sbjct 437 TGAAAAAGTAGCGAAACTTCGCG-ATGTATGTTGGTTCGAGATTCGTGGCAGAACGAATA 495
Query 539 GT--TGCAACCTATCTCCAAGAACTCGTTACTCGGCTTACATTATGTTCA-GGAAAAAGG 595
| || | |||||||||||||||||||||||||||| ||| |||||| || | ||
Sbjct 496 CTCGTGTAT--TATCTCCAAGAACTCGTTACTCGGCTTATATTGTGTTCAAGGGAGT-GG 552
Query 596 ATATATGTTATGGCTTTGAGAATGTGGCTGTAGAAGTTGTAGTAGGATTGGTGGGACAGG 655
||| ||||||||||||| |||||||||| |||||| || |||||| ||||||||||||
Sbjct 553 ATAAATGTTATGGCTTTCAGAATGTGGCCATAGAAGCTGCGGTAGGAGTGGTGGGACAGG 612
Query 656 ATTTAGAAGAGTCTTGTCCAAGAT-ATGTATGCTTT-GATGAGGCTACCGATGAGCAGTT 713
| | ||| | ||||| | |||||||| | ||| |||| | | ||
Sbjct 613 A----GCCT--TCTAG---AAGATTAA-TATGCTTTAG-TGAAGCTA----T-A--AG-- 652
Query 714 TCGATGGAGAGACAGGGGAAAGAACATAGTGAAACC-AGAGTGGAGAAAAGATGGGTGGA 772
|| || | || ||| | |||| | |||||||| | || |||| ||||||||||||
Sbjct 653 --GA-GG-G-GA-AGGAG---GAACGTTGTGAAACCTA-AGCAGAGAGAAGATGGGTGGA 702
Query 773 TGGAGATAAAGCTTGGGGAGTTCTTCAATGAAGGAGGATTATTGAACTA-TGATGAAATT 831
||||||| |||||||||||||||||||||| |||||| || || | || ||||||||||
Sbjct 703 TGGAGATTGAGCTTGGGGAGTTCTTCAATGATGGAGGAATAATGGA-TAATGATGAAATT 761
Query 832 GAGATG-GTTGCTTTAGAGAATAAGCAGCGCCATTGGAAACGTGGCTTGATCATTGGAGG 890
|||||| || |||||||||| |||||||| | || |||| |||||||||||||| |||
Sbjct 762 GAGATGAGT-GCTTTAGAGACTAAGCAGCTCAATCGGAAGTGTGGCTTGATCATTCAAGG 820
Query 891 AATTGAAATCCGTCTTGCGAATATCC 916
|||||||||||| | ||| || ||||
Sbjct 821 AATTGAAATCCGACCTGCTAAAATCC 846
> AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2
| chr2:594655-595852 REVERSE LENGTH=960
Length=960
Score = 283 bits (153), Expect = 2e-75
Identities = 428/556 (77%), Gaps = 37/556 (7%)
Strand=Plus/Plus
Query 118 GATGACTTACCGGAAGAATGTATCTCCATCATAATCTCTTTCACAAGTCCTC-TAGATGC 176
||| |||||||||| || || ||||||| ||| ||||||||||| ||||||| | || ||
Sbjct 169 GATAACTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCGT-GACGC 227
Query 177 GTGCG-TCCTTGCTTCCGTTTCGAAAACCTTTGAATCGGCGGCCAA-GCCAGATATCGTA 234
|||| | | ||||| ||||||||||||||||||||||| | || || |||| ||||
Sbjct 228 TTGCGTTGC-AGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCC-GATAGCGTA 285
Query 235 TGGGAGAAGTTTATTCCGCCAGAGTATGAATCT-TTGATTTCTCAATCCCGAGATTTCTC 293
||||| |||||| |||| | || ||| |||| | | || ||| ||| |||| ||||||
Sbjct 286 TGGGACAAGTTTCTTCCATCGGATTATTCATCTCTAG-TTCCTCCATCTCGAGTTTTCTC 344
Query 294 ATCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACGAATC-TGTTCTAATCGACGATGGCA 352
||||||||||||||||||||||||| | |||||| |||| ||||||| |||| ||||||
Sbjct 345 ATCGAAGAAGGAGCTCTATTTCGCTATATGCGAC-AATCCTGTTCTAGTCGAAGATGGCG 403
Query 353 -AAA-AGTTTCTATGGTTAGAGAAAGCGAATGC-AAAGAGGTGTATCATGTTATCAGAGA 409
||| || |||| |||||||||||| ||||| ||| || ||| |||||||||| ||
Sbjct 404 GAAAGAGCTTCT--GGTTAGAGAAAGAGAATGGGAAAAAG-TGTTTCATGTTATCTCCGA 460
Query 410 TGTAC-CTCTCA--ATCACTTGGGGAAATTA-TCCTCAG-AGTTGGCAATGGATTCCAGA 464
| | || | ||||| |||| | | | ||||||| | ||||| ||||||| | ||
Sbjct 461 AGAAATCTATGTGGATCACATGGGTTAGT-ACTCCTCAGTA-TTGGCGATGGATTTC-GA 517
Query 465 T-CCTCAAGCTAGGTTTGAA-ACAGTAGCGGAGCTACTTGGA-GTATGTTTGTTTGAGAT 521
| ||| |||||||||||||| | |||| | ||||| || | || |||| ||||||| |
Sbjct 518 TTCCTGAAGCTAGGTTTGAAGA-AGTACCAGAGCTGCTCA-ATGTGTGTTGGTTTGAGGT 575
Query 522 TCGTGGCAGAATAAATAGTT--GCAACCTATCTCCAAGAACTCGTTACTCGGCTTACATT 579
|| || |||| |||| | | ||| ||||||| |||| ||||||||||||||||||
Sbjct 576 CCGAGGGGGAATGAATACTAAAG-AAC-TATCTCCTGGAACCCGTTACTCGGCTTACATT 633
Query 580 ATGTTCAGGAAAAAGGATATATGTTATGGCTTTGAGA-ATGTGGCTGTAGAAGTTG-TAG 637
|||||| || |||| || |||| | |||| | ||||| | ||||||| | | |
Sbjct 634 GTGTTCAAGACAAAGAATGGATGTCCTAA-TTTGGGGGATGTGCCAGTAGAAGCTACT-G 691
Query 638 TAGGATTGGTGGGACA 653
| ||||||||||||||
Sbjct 692 TTGGATTGGTGGGACA 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5