BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322564
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02350.1 | Symbols: SKIP3, AtPP2-B9 | SKP1 interacting partn... 1122 0.0
> AT2G02350.1 | Symbols: SKIP3, AtPP2-B9 | SKP1 interacting partner
3 | chr2:617800-619091 REVERSE LENGTH=1030
Length=1030
Score = 1122 bits (607), Expect = 0.0
Identities = 809/904 (89%), Gaps = 23/904 (3%)
Strand=Plus/Plus
Query 28 AAAAATCGAAGCGAAAGGAGAAGAAAGATCGAT-TCTTCTTCTTTCGATTCGTTGCCCGA 86
||||||||||||||||| |||| |||||||| | |||||| || ||||||||||||| ||
Sbjct 1 AAAAATCGAAGCGAAAGCAGAAAAAAGATCG-TCTCTTCTACTCTCGATTCGTTGCCTGA 59
Query 87 GGGATGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCTTGCGTCGCTGCTAC 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 GGGATGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCTTGCGTCGCTGCTGC 119
Query 147 GGTTTCGAAGATCTTTGAATCGGCGATGAAATCAGATATCGTATGGGAGAAGTTTCTTCC 206
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 GGTTTCGAAGATCTTCGAATCGGCGGTGAAATCAGATATCGTATGGGAGAAGTTTCTTCC 179
Query 207 GGAAG-ATTATGAATCTCTGATTCCTCCTTCGCGAGTTTTCTCATCGAAGAAGGAACTCT 265
| | | |||| |||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 180 G-ACGGATTACGAATCTCTGATTACTCCGTCGCGAGTTTTCTCATCGAAGAAGGAACTCT 238
Query 266 ATTTCTCTCTCTGCGACGATCCTCTCCTAATCGACGATGGCAAATTGAGCGTT-TGGTTG 324
|||||||||||||| |||||||||| |||||||| ||||||||| ||||| || |||||
Sbjct 239 ATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCAAAATGAGC-TTATGGTTA 297
Query 325 GAGAAAGCGAGTGGGAAGAGGTGTGTAATGT-ATTCTGCGACTGCAATGATGAATTTCTC 383
|||||||||||||||||||| || |||||| || |||| ||||| ||||||| | ||
Sbjct 298 GAGAAAGCGAGTGGGAAGAGATGCATAATGTTAT-CTGCAACTGC---GATGAATCTATC 353
Query 384 AAGCATGGGAGATATTTTTCAACGTTTCG-AGTGGATTCCAAT-TCCTGAAGCTAGGTTT 441
|||||||| |||||| | ||| |||||| | ||||||||| | ||| ||| ||||||||
Sbjct 354 AAGCATGGCAGATATGTCTCAGCGTTTCCTA-TGGATTCCA-TGTCCAGAATCTAGGTTT 411
Query 442 GAAACAGTAGCG-CAGCTTCGCGAAGCTTGTAAGTTTAAGTTCAATTGCAGAATGAATAC 500
|||||||||||| | |||||||||||| | || |||| |||| |||||||||||||||||
Sbjct 412 GAAACAGTAGCGGC-GCTTCGCGAAGCATATAGGTTTGAGTTTAATTGCAGAATGAATAC 470
Query 501 TCGTGTCCTTTCTCCAAGAACTCGTTACTCGGTCTACATTGTGTTCAAGAAAGCGGATAC 560
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCGTGTCCTTTCTCTAAGAACTCGTTACTCGGTCTACATTGTGTTCAAGAAAGCGGATAA 530
Query 561 TTGTTGTGGTTTTAAGGCTGTGTCTTTAGAGGCTGTAGTTGGGGTGGTGGGACAGGATTC 620
||| ||||| ||||||| ||||||| ||||||||||||||||| | |||||| |||| ||
Sbjct 531 TTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGTAGTTGGGATAGTGGGAGAGGAGTC 590
Query 621 TTTTAGAAGATTCATATGCTTTGATACGCATGCGAAGGGGAAGTTTCGAAAGGGGAAAGT 680
||||||||| |||||||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct 591 TTTTAGAAGTTTCATATGCTTTGATACGCATGGGAAGGGGCAGGCTCGAAAGAGGAAAGT 650
Query 681 GGTTGTGAAACCAGAGTTGAGAGAAGATGGGTGGATGGAGGTAGAGCTTGGGGAATTCT- 739
||| | |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 651 GGTGGCGAAACCAGAGTTGAGAGAAGATGGGTGGATGGAGACAGAGATTGGGGAATTCTA 710
Query 740 TCAATGAAGGAGGATGG--GA-TAGTGATGAAATTGAGATGACTACTGTAGAGCGTAAAT 796
| ||||||||||||| || ||||||||| ||||||| | |||||||||| ||||||
Sbjct 711 T-AATGAAGGAGGATTAATGAGTAGTGATGAGGTTGAGATAAGTACTGTAGAGGGTAAAT 769
Query 797 GCCCCCAGCAGAAGCGTGGTTTGGTCATTCTAGGAATTGAAATTCGTCCTACGAAAATCC 856
| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 770 ACGCCCAGCAGAAGCGTGGTTTGGTCATTCTAGGAATTGAAATCCGTCCTGCGAAAATCC 829
Query 857 TCGAGGAGTTTTCGGGTCGTTGCTTGTGAGGCCAAAAGAAAGC-TTTAGTTCTAGAGATT 915
||||||||||||||| | || | |||||||||||||| ||||| ||||||||||||||||
Sbjct 830 TCGAGGAGTTTTCGGTTTGTCGTTTGTGAGGCCAAAACAAAGCGTTTAGTTCTAGAGATT 889
Query 916 GAAA 919
||||
Sbjct 890 GAAA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5